Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders
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Citações na Scopus
5
Tipo de produção
article
Data de publicação
2019
Título da Revista
ISSN da Revista
Título do Volume
Editora
WILEY
Autores
FELTRIN, Arthur Sant'Anna
PEREIRA, Jose Geraldo de Carvalho
SANTOS, Ana Cecilia Feio dos
MASCHIETTO, Mariana
Citação
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS, v.180, n.6, Special Issue, p.390-414, 2019
Resumo
The male-biased prevalence of certain neurodevelopmental disorders and the sex-biased outcomes associated with stress exposure during gestation have been previously described. Here, we hypothesized that genes distinctively targeted by only one or both homologous proteins highly conserved across therian mammals, SOX3 and SRY, could induce sexual adaptive changes that result in a differential risk for neurodevelopmental disorders. ChIP-seq/chip data showed that SOX3/SRY gene targets were expressed in different brain cell types in mice. We used orthologous human genes in rodent genomes to extend the number of SOX3/SRY set (1,721). These genes were later found to be enriched in five modules of coexpressed genes during the early and mid-gestation periods (FDR < 0.05), independent of sexual hormones. Genes with differential expression (24, p < 0.0001) and methylation (40, p < 0.047) between sexes were overrepresented in this set. Exclusive SOX3 or SRY target genes were more associated with the late gestational and postnatal periods. Using autism as a model sex-biased disorder, the SOX3/SRY set was enriched in autism gene databases (FDR <= 0.05), and there were more de novo variations from the male autism spectrum disorder (ASD) samples under the SRY peaks compared to the random peaks (p < 0.024). The comparison of coexpressed networks of SOX3/SRY target genes between male autism and control samples revealed low preservation in gene modules related to stress response (99 genes) and neurogenesis (78 genes). This study provides evidence that while SOX3 is a regulatory mechanism for both sexes, the male-exclusive SRY also plays a role in gene regulation, suggesting a potential mechanism for sex bias in ASD.
Palavras-chave
neurodevelopmental disorder, sex, SOX3, SRY, stress
Referências
- Abrahams BS, 2013, MOL AUTISM, V4, DOI 10.1186/2040-2392-4-36
- Araujo FC, 2015, PHYSIOL GENOMICS, V47, P177, DOI 10.1152/physiolgenomics.00138.2014
- Arnold AP, 2004, NAT REV NEUROSCI, V5, P701, DOI 10.1038/nrn1494
- Arnold AP, 2004, TRENDS ENDOCRIN MET, V15, P6, DOI 10.1016/j.tem.2003.11.001
- Arnold AP, 2009, FRONT NEUROENDOCRIN, V30, P1, DOI 10.1016/j.yfrne.2008.11.001
- Autism Spectrum Disorder Working Group of the Psychiatry Genomics Consortium, 2015, AUT SPECTR DIS WORK
- Bale TL, 2015, NAT NEUROSCI, V18, P1413, DOI 10.1038/nn.4112
- Barski A, 2007, CELL, V129, P823, DOI 10.1016/j.cell.2007.05.009
- Bellott DW, 2014, NATURE, V508, P494, DOI 10.1038/nature13206
- Bergsland M, 2011, GENE DEV, V25, P2453, DOI 10.1101/gad.176008.111
- Bergstrom DE, 2000, GENESIS, V28, P111, DOI 10.1002/1526-968X(200011/12)28:3/4<111::AID-GENE40>3.3.CO;2-X
- Bhandari RK, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0043380
- Bhatnagar S, 2001, BRIT J NUTR, V85, pS139, DOI 10.1079/BJN2000306
- Bourgeron T, 2015, NAT REV NEUROSCI, V16, P551, DOI 10.1038/nrn3992
- Branco AT, 2013, HEREDITY, V111, P8, DOI 10.1038/hdy.2013.5
- Brunelli S, 2003, GENESIS, V36, P12, DOI 10.1002/gene.10193
- Budday S, 2015, FRONT CELL NEUROSCI, V9, DOI 10.3389/fncel.2015.00257
- Bylund M, 2003, NAT NEUROSCI, V6, P1162, DOI 10.1038/nn1131
- Case LK, 2013, GENOME RES, V23, P1474, DOI 10.1101/gr.156703.113
- Chawla K, 2013, BIOINFORMATICS, V29, P2519, DOI 10.1093/bioinformatics/btt432
- Cheah PS, 2015, SPRINGERPLUS, V4, DOI 10.1186/s40064-015-1194-1
- Chen C.-Y., 2016, BIORXIV, DOI [10.1101/082289, DOI 10.1101/082289]
- Choi J, 2016, PLOS GENET, V12, DOI 10.1371/journal.pgen.1006121
- Clement TM, 2011, BIOL REPROD, V85, P277, DOI 10.1095/biolreprod.110.090282
- Codina-Sola M, 2015, MOL AUTISM, V6, DOI 10.1186/s13229-015-0017-0
- Collignon J, 1996, DEVELOPMENT, V122, P509
- Cortez D, 2014, NATURE, V508, P488, DOI 10.1038/nature13151
- Czech DP, 2012, J NEUROCHEM, V122, P260, DOI 10.1111/j.1471-4159.2012.07782.x
- De Rubeis S, 2014, NATURE, V515, P209, DOI 10.1038/nature13772
- Devlin B, 2012, CURR OPIN GENET DEV, V22, P229, DOI 10.1016/j.gde.2012.03.002
- Dewing P, 2006, CURR BIOL, V16, P415, DOI 10.1016/j.cub.2006.01.017
- Dewing P, 2003, MOL BRAIN RES, V118, P82, DOI 10.1016/S0169-328X(03)00339-5
- Dimas AS, 2012, GENOME RES, V22, P2368, DOI 10.1101/gr.134981.111
- Douet V, 2007, BIOCHEM BIOPH RES CO, V354, P66, DOI 10.1016/j.bbrc.2006.12.151
- Eisinger BE, 2013, BMC NEUROSCI, V14, DOI 10.1186/1471-2202-14-147
- Ellegren H, 2007, NAT REV GENET, V8, P689, DOI 10.1038/nrg2167
- FOSTER JW, 1994, P NATL ACAD SCI USA, V91, P1927, DOI 10.1073/pnas.91.5.1927
- Giedd JN, 1997, PROG NEURO-PSYCHOPH, V21, P1185, DOI 10.1016/S0278-5846(97)00158-9
- Glahn F, 2008, ARCH TOXICOL, V82, P513, DOI 10.1007/s00204-008-0331-9
- Grabrucker AM, 2014, DEV NEUROBIOL, V74, P136, DOI 10.1002/dneu.22089
- Grabrucker AM, 2011, EMBO J, V30, P569, DOI 10.1038/emboj.2010.336
- Graves JAM, 2016, NAT REV GENET, V17, P33, DOI 10.1038/nrg.2015.2
- Guberman JM, 2011, DATABASE-OXFORD, DOI 10.1093/database/bar041
- Gupta S, 2014, NAT COMMUN, V5, DOI 10.1038/ncomms6748
- Hagmeyer S, 2015, FRONT BEHAV NEUROSCI, V8, DOI 10.3389/fnbeh.2014.00443
- HALAS ES, 1977, PHYSIOL BEHAV, V19, P653, DOI 10.1016/0031-9384(77)90040-3
- Hicks SW, 2005, BBA-MOL CELL RES, V1744, P406, DOI 10.1016/j.bbamcr.2005.03.002
- HOLLER M, 1988, GENE DEV, V2, P1127, DOI 10.1101/gad.2.9.1127
- Hong KH, 2000, J NUTR BIOCHEM, V11, P165, DOI 10.1016/S0955-2863(99)00089-3
- Hu YH, 2011, BMC BIOINFORMATICS, V12, DOI 10.1186/1471-2105-12-357
- Jin VX, 2007, GENOME RES, V17, P807, DOI 10.1101/gr.6006107
- Jing MY, 2015, J TRACE ELEM MED BIO, V30, P77, DOI 10.1016/j.jtemb.2014.10.013
- Joel D, 2017, NEUROPSYCHOPHARMACOL, V42, P379, DOI 10.1038/npp.2016.79
- Kang HJ, 2011, NATURE, V478, P483, DOI 10.1038/nature10523
- Kido T, 2017, SCI REP-UK, V7, DOI 10.1038/s41598-017-04117-6
- Kimura H, 2013, J HUM GENET, V58, P439, DOI 10.1038/jhg.2013.66
- KIRKSEY A, 1994, AM J CLIN NUTR, V60, P782
- KIRKSEY A, 1991, AM J CLIN NUTR, V54, P657
- Langfelder P, 2007, BMC SYST BIOL, V1, DOI 10.1186/1752-0509-1-54
- Langfelder P, 2008, BMC BIOINFORMATICS, V9, DOI 10.1186/1471-2105-9-559
- Langfelder P, 2011, PLOS COMPUT BIOL, V7, DOI 10.1371/journal.pcbi.1001057
- Lee J, 2012, BIOESSAYS, V34, P454, DOI 10.1002/bies.201100159
- Lemos B, 2008, SCIENCE, V319, P91, DOI 10.1126/science.1148861
- Lemos B, 2010, P NATL ACAD SCI USA, V107, P15826, DOI 10.1073/pnas.1010383107
- Lenz KM, 2015, NEUROSCIENTIST, V21, P306, DOI 10.1177/1073858414536468
- Lesch BJ, 2016, NAT GENET, V48, P888, DOI 10.1038/ng.3591
- Levenson CW, 2011, ADV NUTR, V2, P96, DOI 10.3945/an.110.000174
- Li YM, 2014, CELL REP, V8, P723, DOI 10.1016/j.celrep.2014.06.055
- Lin S, 2014, P NATL ACAD SCI USA, V111, P17224, DOI 10.1073/pnas.1413624111
- Loke H, 2015, INT J BIOCHEM CELL B, V65, P139, DOI 10.1016/j.biocel.2015.05.024
- Lombardo MV, 2012, J NEUROSCI, V32, P674, DOI 10.1523/JNEUROSCI.4389-11.2012
- Maschietto M, 2017, SCI REP-UK, V7, DOI 10.1038/srep44547
- Matys V, 2006, NUCLEIC ACIDS RES, V34, pD108, DOI 10.1093/nar/gkj143
- Mayer A, 2000, NEUROGENETICS, V3, P25, DOI 10.1007/s100480000093
- McAninch D, 2014, PLOS ONE, V9, DOI 10.1371/journal.pone.0113361
- McCarthy MM, 2012, J NEUROSCI, V32, P2241, DOI 10.1523/JNEUROSCI.5372-11.2012
- MCKENZIE JM, 1975, J NUTR, V105, P1466
- Mcrae JF, 2017, NATURE, V542, P433, DOI 10.1038/nature21062
- Miller JA, 2014, NATURE, V508, P199, DOI 10.1038/nature13185
- Milsted A, 2004, NEUROSCI LETT, V369, P203, DOI 10.1016/j.neulet.2004.07.052
- Mottron L, 2015, MOL AUTISM, V6, DOI 10.1186/s13229-015-0024-1
- Mueller BR, 2008, J NEUROSCI, V28, P9055, DOI 10.1523/JNEUROSCI.1424-08.2008
- Murmu MS, 2006, EUR J NEUROSCI, V24, P1477, DOI 10.1111/j.1460-9568.2006.05024.x
- Neufang S, 2009, CEREB CORTEX, V19, P464, DOI 10.1093/cercor/bhn100
- Ngun TC, 2011, FRONT NEUROENDOCRIN, V32, P227, DOI 10.1016/j.yfrne.2010.10.001
- Ober C, 2008, NAT REV GENET, V9, P911, DOI 10.1038/nrg2415
- Parikshak NN, 2016, NATURE, V540, P423, DOI 10.1038/nature20612
- Parikshak NN, 2013, CELL, V155, P1008, DOI 10.1016/j.cell.2013.10.031
- Peper JS, 2012, J NEUROSCI, V32, P6745, DOI 10.1523/JNEUROSCI.1012-12.2012
- Petrovski S, 2013, PLOS GENET, V9, DOI 10.1371/journal.pgen.1003709
- Pfaender S, 2014, METALLOMICS, V6, P960, DOI 10.1039/c4mt00008k
- Pialoux V, 2009, FREE RADICAL BIO MED, V46, P321, DOI 10.1016/j.freeradbiomed.2008.10.047
- Pilsner JR, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0037147
- Quinlan AR, 2010, BIOINFORMATICS, V26, P841, DOI 10.1093/bioinformatics/btq033
- R Core Team, 2015, R LANG ENV STAT COMP
- Ratnu VS, 2017, J NEUROSCI RES, V95, P301, DOI 10.1002/jnr.23886
- Reiner O, 2016, J NEUROCHEM, V136, P440, DOI 10.1111/jnc.13403
- Reinius B, 2009, MOL PSYCHIATR, V14, P988, DOI 10.1038/mp.2009.79
- REISERT I, 1991, TRENDS NEUROSCI, V14, P468, DOI 10.1016/0166-2236(91)90047-X
- Rinn JL, 2005, TRENDS GENET, V21, P298, DOI 10.1016/j.tig.2005.03.005
- Rosenbloom KR, 2015, NUCLEIC ACIDS RES, V43, pD670, DOI 10.1093/nar/gku1177
- Sacher J, 2013, MAGN RESON IMAGING, V31, P366, DOI 10.1016/j.mri.2012.06.007
- Sackton TB, 2013, GENOME BIOL EVOL, V5, P255, DOI 10.1093/gbe/evt005
- Sagvolden T, 2005, BIOL PSYCHIAT, V57, P1239, DOI 10.1016/j.biopsych.2005.02.002
- Sanders SJ, 2015, NEURON, V87, P1215, DOI 10.1016/j.neuron.2015.09.016
- Sandstead HH, 2003, J TRACE ELEM EXP MED, V16, P165, DOI 10.1002/jtra.10042
- SANDSTEAD HH, 1975, FED PROC, V34, P86
- Schaafsma SM, 2014, FRONT NEUROENDOCRIN, V35, P255, DOI 10.1016/j.yfrne.2014.03.006
- Schroder M, 2008, CELL MOL LIFE SCI, V65, P862, DOI 10.1007/s00018-007-7383-5
- Schug J, 2005, GENOME BIOL, V6, DOI 10.1186/gb-2005-6-4-r33
- Sekido R, 2014, ADV GENET, V86, P135, DOI 10.1016/B978-0-12-800222-3.00007-3
- Sharma K, 2015, NAT NEUROSCI, V18, P1819, DOI 10.1038/nn.4160
- Skaletsky H, 2003, NATURE, V423, P825, DOI 10.1038/nature01722
- Smoller JW, 2013, LANCET, V381, P1371, DOI 10.1016/S0140-6736(12)62129-1
- Spiers H, 2015, GENOME RES, V25, P338, DOI 10.1101/gr.180273.114
- Stiles J, 2010, NEUROPSYCHOL REV, V20, P327, DOI 10.1007/s11065-010-9148-4
- Sutton E, 2011, J CLIN INVEST, V121, P328, DOI 10.1172/JCI42580
- Szklarczyk D, 2017, NUCLEIC ACIDS RES, V45, pD362, DOI 10.1093/nar/gkw937
- Tau GZ, 2010, NEUROPSYCHOPHARMACOL, V35, P147, DOI 10.1038/npp.2009.115
- Thompson CL, 2014, NEURON, V83, P309, DOI 10.1016/j.neuron.2014.05.033
- Tobi EW, 2009, HUM MOL GENET, V18, P4046, DOI 10.1093/hmg/ddp353
- Topalovic V, 2017, PLOS ONE, V12, DOI 10.1371/journal.pone.0184099
- Trabzuni D, 2013, NAT COMMUN, V4, DOI 10.1038/ncomms3771
- Turner ME, 2011, AM J PHYSIOL-REG I, V301, pR561, DOI 10.1152/ajpregu.00645.2010
- Tyszka-Czochara M, 2014, ACTA POL PHARM, V71, P369
- Verma D, 2014, PROG NEURO-PSYCHOPH, V50, P11, DOI 10.1016/j.pnpbp.2013.11.010
- Vilella AJ, 2009, GENOME RES, V19, P327, DOI 10.1101/gr.073585.107
- Voineagu I, 2011, NATURE, V474, P380, DOI 10.1038/nature10110
- Wainstock T, 2015, STRESS, V18, P49, DOI 10.3109/10253890.2014.974153
- WALLWORK JC, 1985, J NUTR, V115, P252
- Wang J, 2013, NUCLEIC ACIDS RES, V41, pW77, DOI 10.1093/nar/gkt439
- Wang P, 2018, TRANSL PSYCHIAT, V8, DOI 10.1038/s41398-017-0058-6
- Weinstock M, 2011, STRESS, V14, P604, DOI 10.3109/10253890.2011.588294
- Werling DM, 2016, BIOL SEX DIFFER, V7, DOI 10.1186/s13293-016-0112-8
- Werling DM, 2016, NAT COMMUN, V7, DOI 10.1038/ncomms10717
- Wijchers PJ, 2010, DEV CELL, V19, P477, DOI 10.1016/j.devcel.2010.08.005
- Wolstenholme JT, 2013, GENES BRAIN BEHAV, V12, P166, DOI 10.1111/gbb.12010
- Wood HB, 1999, MECH DEVELOP, V86, P197, DOI 10.1016/S0925-4773(99)00116-1
- Wu JB, 2009, FASEB J, V23, P4029, DOI 10.1096/fj.09-139097
- Xu J, 2002, HUM MOL GENET, V11, P1409, DOI 10.1093/hmg/11.12.1409
- Xu J, 2013, BRAIN RES, V1527, P57, DOI 10.1016/j.brainres.2013.06.025
- Yanagisawa Y, 2002, BBA-GENE STRUCT EXPR, V1577, P457, DOI 10.1016/S0167-4781(02)00482-7
- Yuen RKC, 2017, NAT NEUROSCI, V20, P602, DOI 10.1038/nn.4524
- Zagron G, 2006, BEHAV BRAIN RES, V175, P323, DOI 10.1016/j.bbr.2006.09.003
- Zaits MN, 2014, MOL PSYCHIATR, V19, P848, DOI 10.1038/mp.2013.93
- Zhang-James Y, 2014, BEHAV BRAIN RES, V269, P103, DOI 10.1016/j.bbr.2014.04.035
- Zhu WG, 2003, MOL CELL BIOL, V23, P4056, DOI 10.1128/MCB.23.12.4056-4065.2003
- Ziats MN, 2013, MOL AUTISM, V4, DOI 10.1186/2040-2392-4-10