Phenotypic and genotypic characteristics of a carbapenem-resistant Serratia marcescens cohort and outbreak: describing an opportunistic pathogen

Carregando...
Imagem de Miniatura
Citações na Scopus
4
Tipo de produção
article
Data de publicação
2022
Título da Revista
ISSN da Revista
Título do Volume
Editora
ELSEVIER
Citação
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS, v.59, n.1, article ID 106463, 5p, 2022
Projetos de Pesquisa
Unidades Organizacionais
Fascículo
Resumo
Serratia marcescens is an emerging opportunistic pathogen with high genetic diversity. This article describes the microbiological characteristics of isolates and the risk factors for infections caused by carbapenem-resistant S. marcescens. A retrospective study of patients colonized (n=43) and infected (n= 20) with carbapenem-resistant S. marcescens over a 3-year period was conducted. Polymerase chain reaction for carbapenemase genes and molecular typing of all available strains was performed. Forty-two isolates were analysed, including three environmental samples identified during an outbreak. Thirty-five carbapenem-resistant S. marcescens carried bla KPC-2, one isolate was bla(NDM)-positive and four isolates carried bla(OXA)-101. The genomes were grouped into three clusters with 100% bootstrap; three patterns of mutations on ompC and ompF were found. The strains carried virulence genes related to invasion and haemolysis, and the environmental strains presented fewer mutations on the virulence genes than the clinical strains. Multi-variate analysis showed that previous use of polymyxin (P= 0.008) was an independent risk factor for carbapenem-resistant S. marcescens infection. This study highlighted that bla KPC-2 in association with ompC or ompF mutation was the most common mechanism of resistance in the study hospital, and that previous use of polymyxin was an independent risk factor for carbapenem-resistant S. marcescens. There was a predominant clone, including the environmental isolates, suggesting that crosstransmission was involved in the dissemination of this pathogen.
Palavras-chave
Carbapenem-resistant Serratia marcescens, NDM, KPC, Serratia marcescens
Referências
  1. Adamczuk M, 2015, BIOMED RES INT, V2015, DOI 10.1155/2015/414681
  2. [Anonymous], 2016, CLIN LAB STANDARDS I
  3. Bertels F, 2014, MOL BIOL EVOL, V31, P1077, DOI 10.1093/molbev/msu088
  4. Bortolaia V, 2020, J ANTIMICROB CHEMOTH, V75, P3491, DOI 10.1093/jac/dkaa345
  5. Carattoli A, 2014, ANTIMICROB AGENTS CH, V58, P3895, DOI 10.1128/AAC.02412-14
  6. Carver T, 2012, BIOINFORMATICS, V28, P464, DOI 10.1093/bioinformatics/btr703
  7. Galtier N, 1996, COMPUT APPL BIOSCI, V12, P543
  8. Horan TC, 2008, AM J INFECT CONTROL, V36, P309, DOI 10.1016/j.ajic.2008.03.002
  9. Khaitlina S, 2020, INT J MOL SCI, V21, DOI 10.3390/ijms21114025
  10. Li H, 2009, BIOINFORMATICS, V25, P1754, DOI 10.1093/bioinformatics/btp324
  11. Mahlen SD, 2011, CLIN MICROBIOL REV, V24, P755, DOI 10.1128/CMR.00017-11
  12. Mariappan Shanthi, 2017, Int J Appl Basic Med Res, V7, P32, DOI 10.4103/2229-516X.198520
  13. Mitchell BG, 2015, J HOSP INFECT, V91, P211, DOI 10.1016/j.jhin.2015.08.005
  14. Moradigaravand D, 2016, GENOME RES, V26, P1101, DOI 10.1101/gr.205245.116
  15. Porto A, 2010, DIAGN MICR INFEC DIS, V66, P228, DOI 10.1016/j.diagmicrobio.2009.09.010
  16. Rosa JF, 2017, BMC MICROBIOL, V17, DOI 10.1186/s12866-017-0970-1
  17. Samonis G, 2014, EUR J CLIN MICROBIOL, V33, P1505, DOI 10.1007/s10096-014-2097-8
  18. Seemann T, 2014, BIOINFORMATICS, V30, P2068, DOI 10.1093/bioinformatics/btu153
  19. Silva KE, 2015, J CLIN MICROBIOL, V53, P2324, DOI 10.1128/JCM.00727-15
  20. Srinivasan VB, 2019, GENOMICS, V111, P653, DOI 10.1016/j.ygeno.2018.04.001
  21. Suh B, 2010, ANTIMICROB AGENTS CH, V54, P5057, DOI 10.1128/AAC.00768-10