High performance mass spectrometry based proteomics reveals enzyme and signaling pathway regulation in neutrophils during the early stage of surgical trauma
Carregando...
Citações na Scopus
15
Tipo de produção
article
Data de publicação
2017
Editora
WILEY-V C H VERLAG GMBH
Indexadores
Título da Revista
ISSN da Revista
Título do Volume
Autores
TAHIR, Muhammad
CASTRO, Mariana S.
SIDOLI, Simone
ROEPSTORFF, Peter
FONTES, Wagner
Autor de Grupo de pesquisa
Editores
Coordenadores
Organizadores
Citação
PROTEOMICS CLINICAL APPLICATIONS, v.11, n.1-2, article ID UNSP 1600001, 16p, 2017
Resumo
Purpose: In clinical conditions trauma is associated with high mortality and morbidity. Neutrophils play a key role in the development of multiple organ failure after trauma Experimental design: To have a detailed understanding of the neutrophil activation at primary stages after trauma, neutrophils are isolated from control and surgical trauma rats in this study. Extracted proteins are analyzed using nano liquid chromatography coupled with tandem mass spectrometry. Results: A total of 2924 rat neutrophil proteins are identified in our analysis, of which 393 are found differentially regulated between control and trauma groups. By using functional pathways analysis of the 190 proteins up-regulated in surgical trauma, we found proteins related to transcription initiation and protein biosynthesis. On the other hand, among the 203 proteins down-regulated in surgical trauma we found enrichment for proteins of the immune response, proteasome degradation and actin cytoskeleton. Overall, enzyme prediction analysis revealed that regulated enzymes are directly involved in neutrophil apoptosis, directional migration and chemotaxis. Our observations are then confirmed by in silico protein-protein interaction analysis. Conclusions and clinical relevance: Collectively, our results reveal that neutrophils drastically regulate their biochemical pathways after the early stages of surgical trauma, showing lower activity. This implies higher susceptibility of the trauma patients to infection and bystander tissues damage.
Palavras-chave
Inflammation, Neutrophil, Proteome, Surgery, Trauma
Referências
- Adams JM, 2001, J TRAUMA, V51, P452, DOI 10.1097/00005373-200109000-00005
- Almond JB, 2002, LEUKEMIA, V16, P433, DOI 10.1038/sj/leu/2402417
- Anderson SI, 2003, CELL MOTIL CYTOSKEL, V54, P135, DOI 10.1002/cm.10091
- Aquino EN, 2016, PROTEIN PEPTIDE LETT, V23, P142, DOI 10.2174/0929866523666151202210604
- Azevedo EP, 2015, J BIOL CHEM, V290, P22174, DOI 10.1074/jbc.M115.640094
- BELLISOLA G, 1987, CLIN BIOCHEM, V20, P415, DOI 10.1016/0009-9120(87)90007-5
- Botelho RJ, 2000, J CELL BIOL, V151, P1353, DOI 10.1083/jcb.151.7.1353
- BOTHA AJ, 1995, SURGERY, V118, P358, DOI 10.1016/S0039-6060(05)80345-9
- Boussetta T, 2010, BLOOD, V116, P5795, DOI 10.1182/blood-2010-03-273094
- Brosch M, 2009, J PROTEOME RES, V8, P3176, DOI 10.1021/pr800982s
- Brown GE, 1999, J TRAUMA, V46, P297, DOI 10.1097/00005373-199902000-00017
- Butler KL, 2010, PLOS ONE, V5, DOI 10.1371/journal.pone.0011921
- Buttenschoen K, 2010, CURR OPIN INFECT DIS, V23, P259, DOI 10.1097/QCO.0b013e32833939cb
- Carvalho LO, 2015, J CELL BIOCHEM, V116, P1831, DOI 10.1002/jcb.25124
- Chiang N, 2006, PHARMACOL REV, V58, P463, DOI 10.1124/pr.58.3.4
- Chitnis D, 1996, J LEUKOCYTE BIOL, V59, P835
- Chouker A, 2005, ARCH SURG-CHICAGO, V140, P129, DOI 10.1001/archsurg.140.2.129
- Cicchetti G, 2002, CRIT REV ORAL BIOL M, V13, P220
- Dienz O, 2012, MUCOSAL IMMUNOL, V5, P258, DOI 10.1038/mi.2012.2
- Ding JB, 1996, J BIOL CHEM, V271, P24869
- Edwards SW, 1997, IMMUNOL TODAY, V18, P320, DOI 10.1016/S0167-5699(97)01087-6
- FABIAN TC, 1994, ANN SURG, V220, P552, DOI 10.1097/00000658-199410000-00013
- FONTES B, 1988, DIS COLON RECTUM, V31, P298, DOI 10.1007/BF02554364
- Fontes W, 1998, ANAL BIOCHEM, V258, P259, DOI 10.1006/abio.1998.2565
- Gobom J, 1999, J MASS SPECTROM, V34, P105, DOI 10.1002/(SICI)1096-9888(199902)34:2<105::AID-JMS768>3.3.CO;2-W
- GRANGER DN, 1995, ANNU REV PHYSIOL, V57, P311
- Gurcel L, 2006, CELL, V126, P1135, DOI 10.1016/j.cell.2006.07.033
- HAZUDA DJ, 1990, J BIOL CHEM, V265, P6318
- Hierholzer C, 1999, TRANSPLANTATION, V68, P1244, DOI 10.1097/00007890-199911150-00006
- Hietbrink F, 2009, INJURY, V40, P851, DOI 10.1016/j.injury.2008.11.002
- Hsing CH, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0129693
- Huang RY, 1998, MOL CELL BIOL, V18, P7130
- HUGHES V, 1987, BIOSCIENCE REP, V7, P881, DOI 10.1007/BF01119479
- HUMPHREYS JM, 1989, BIOCHEM PHARMACOL, V38, P1241, DOI 10.1016/0006-2952(89)90329-8
- Johnson JL, 2001, J TRAUMA, V50, P449, DOI 10.1097/00005373-200103000-00008
- Junger WG, 2013, SHOCK, V40, P366, DOI 10.1097/SHK.0000000000000038
- Khanapure SP, 2007, CURR TOP MED CHEM, V7, P311, DOI 10.2174/156802607779941314
- Khwaja A, 1999, BLOOD, V94, P291
- KUBES P, 1995, J CLIN INVEST, V95, P2510, DOI 10.1172/JCI117952
- Kuhn H, 2006, PROG LIPID RES, V45, P334, DOI 10.1016/j.plipres.2006.02.003
- Kumar R, 2002, J CELL PHYSIOL, V193, P133, DOI 10.1002/jcp.10167
- Kurihara T, 2013, FASEB J, V27, P2270, DOI 10.1096/fj.12-219519
- Laursen I, 2008, CLIN CHIM ACTA, V395, P159, DOI 10.1016/j.cca.2008.06.006
- Lawrence T, 2009, CSH PERSPECT BIOL, V1, DOI 10.1101/cshperspect.a001651
- Le'Negrate G, 2003, CELL DEATH DIFFER, V10, P153, DOI 10.1038/sj.cdd.4401110
- Liberio MS, 2011, AMINO ACIDS, V40, P51, DOI 10.1007/s00726-009-0384-y
- Ludwig A, 2000, J IMMUNOL, V165, P1044
- Luo HBR, 2015, EMBO REP, V16, P149, DOI 10.15252/embr.201439466
- Molloy EJ, 2005, PEDIATR RES, V57, P806, DOI 10.1203/01.PDR.0000156500.13600.B5
- Nascimento A, 2007, TOXICON, V50, P1095, DOI 10.1016/j.toxicon.2007.07.014
- Palmisano G, 2010, NAT PROTOC, V5, P1974, DOI 10.1038/nprot.2010.167
- Paunel-Gorgulu A, 2012, MOL MED, V18, P325, DOI 10.2119/molmed.2011.00380
- Pillay J, 2012, J CLIN INVEST, V122, P327, DOI 10.1172/JCI57990
- Plytycz B, 2002, FOLIA BIOL-KRAKOW, V50, P181
- Power CP, 2004, J IMMUNOL, V173, P5229
- Rollins BJ, 1997, BLOOD, V90, P909
- Rossaint J, 2012, CRIT CARE, V16, DOI 10.1186/cc11518
- Russo-Carbolante E.M.S., 2002, COMP CLIN PATHOL, V11, P71, DOI 10.1007/S005800200001
- SAMUELSSON B, 1987, SCIENCE, V237, P1171, DOI 10.1126/science.2820055
- SAVILL JS, 1989, J CLIN INVEST, V83, P865, DOI 10.1172/JCI113970
- Savitha D, 2008, Indian J Physiol Pharmacol, V52, P302
- Shao W, 2007, J BIOL CHEM, V282, P36321, DOI 10.1074/jbc.M708182200
- Shureiqi I, 2001, CANCER RES, V61, P4879
- SILLIMAN CC, 1994, J LAB CLIN MED, V124, P684
- Szklarczyk D, 2015, NUCLEIC ACIDS RES, V43, pD447, DOI 10.1093/nar/gku1003
- Tahir M, 2015, CLINICS, V70, P61, DOI 10.6061/clinics/2015(01)11
- Tang DG, 1996, P NATL ACAD SCI USA, V93, P5241, DOI 10.1073/pnas.93.11.5241
- Teles LMB, 2012, PROTEIN PEPTIDE LETT, V19, P663
- Tian XF, 2006, LIFE SCI, V79, P2069, DOI 10.1016/j.lfs.2006.06.027
- Vaughan JE, 2006, AM J OBSTET GYNECOL, V195, P1415, DOI 10.1016/j.ajog.2006.02.053
- Villa P, 2002, J INFECT DIS, V185, P1115, DOI 10.1086/340042
- Wang J, 2013, NUCLEIC ACIDS RES, V41, pW77, DOI 10.1093/nar/gkt439
- Wisniewski JR, 2009, NAT METHODS, V6, P359, DOI [10.1038/nmeth.1322, 10.1038/NMETH.1322]
- Zhou JY, 2013, PROTEOM CLIN APPL, V7, P571, DOI 10.1002/prca.201200109
- Zhu J, 2014, PROTEOMICS, V14, P1688, DOI 10.1002/pmic.201400009