Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.

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dc.contributor Sistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP
dc.contributor.author RAMOS, Patricia L. FMUSP-HC
TRAPPEN, Stefanie Van
THOMPSON, Fabiano L.
ROCHA, Rafael C. S.
BARBOSA, Heloiza R.
VOS, Paul De
MOREIRA-FILHO, Carlos A. FMUSP-HC
dc.date.issued 2011
dc.identifier.citation INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.61, p.926-931, 2011
dc.identifier.issn 1466-5026
dc.identifier.uri http://observatorio.fm.usp.br/handle/OPI/23283
dc.description.abstract A Gram-negative, rod-shaped, non-spore-forming and nitrogen-fixing bacterium, designated ICB 89(T), was isolated from stems of a Brazilian sugar cane variety widely used in organic farming. 16S rRNA gene sequence analysis revealed that strain ICB 89(T) belonged to the genus Stenotrophomonas and was most closely related to Stenotrophomonas maltophilia LMG 958(T), Stenotrophomonas rhizophila LMG 22075(T), Stenotrophomonas nitritireducens L2(T), [Pseudomonas] geniculata ATCC 19374(T), [Pseudomonas] hibiscicola ATCC 19867(T) and [Pseudomonas] beteli ATCC 19861(T). DNA-DNA hybridization together with chemotaxonomic data and biochemical characteristics allowed the differentiation of strain ICB 89(T) from its nearest phylogenetic neighbours. Therefore, strain ICB 89(T) represents a novel species, for which the name Stenotrophomonas pavanii sp. nov. is proposed. The type strain is ICB 89(T) (=CBMAI 564(T) =LMG 25348(T)).
dc.description.sponsorship · Biota-FAPESP [00/5402-0]
· CNPq [300966/2006-7]
· Federal Public Planning Service - Science Policy, Belgium
dc.language.iso eng
dc.publisher SOC GENERAL MICROBIOLOGY
dc.relation.ispartof International Journal of Systematic and Evolutionary Microbiology
dc.rights restrictedAccess
dc.subject.other protein; genus
dc.title Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.
dc.type article
dc.rights.holder Copyright SOC GENERAL MICROBIOLOGY
dc.description.group LIM/36
dc.identifier.doi 10.1099/ijs.0.019372-0
dc.identifier.pmid 20495025
dc.type.category original article
dc.type.version publishedVersion
hcfmusp.author RAMOS, Patricia L.:FM:
hcfmusp.author MOREIRA-FILHO, Carlos A.:FM:MPE
hcfmusp.author.external · TRAPPEN, Stefanie Van:Univ Ghent, Microbiol Lab, BCCM LMG Bacteria Collect, Ghent, Belgium
· THOMPSON, Fabiano L.:Univ Fed Rio de Janeiro, Inst Biol, Dept Genet, Rio De Janeiro, Brazil
· ROCHA, Rafael C. S.:Univ Sao Paulo, Dept Microbiol, Inst Biomed Sci, Sao Paulo, Brazil
· BARBOSA, Heloiza R.:Univ Sao Paulo, Dept Microbiol, Inst Biomed Sci, Sao Paulo, Brazil
· VOS, Paul De:Univ Ghent, Microbiol Lab, BCCM LMG Bacteria Collect, Ghent, Belgium
hcfmusp.origem.id 2-s2.0-79955462043
hcfmusp.origem.id WOS:000290135000039
hcfmusp.publisher.city READING
hcfmusp.publisher.country ENGLAND
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dc.description.index MEDLINE
hcfmusp.citation.scopus 41
hcfmusp.citation.wos 39
hcfmusp.affiliation.country Brasil
hcfmusp.affiliation.country Bélgica


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