First Detection of DS-1-like G1P[8] Double-gene Reassortant Rotavirus Strains on The American Continent, Brazil, 2013

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dc.contributor Sistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP
dc.contributor.author LUCHS, Adriana
COSTA, Antonio Charlys da FMUSP-HC
CILLI, Audrey
KOMNINAKIS, Shirley Cavalcante Vasconcelos
CARMONA, Rita de Cassia Compagnoli
MORILLO, Simone Guadagnucci
SABINO, Ester Cerdeira FMUSP-HC
TIMENETSKY, Maria do Carmo Sampaio Tavares
dc.date.issued 2019
dc.identifier.citation SCIENTIFIC REPORTS, v.9, article ID 2210, 7p, 2019
dc.identifier.issn 2045-2322
dc.identifier.uri http://observatorio.fm.usp.br/handle/OPI/31726
dc.description.abstract Emergence of DS-1-like-G1P[8] rotavirus in Asia have been recently reported. We report for the first time the detection and the whole genome phylogenetic analysis of DS-1-like-G1P[8] strains in America. From 2013 to 2017, a total of 4226 fecal samples were screened for rotavirus by ELISA, PAGE, RT-PCR and sequencing. G1P[8] represented 3.7% (30/800) of all rotavirus-positive samples. DS-1-like-G1P[8] comprised 1.6% (13/800) detected exclusively in 2013, and Wa-like-G1P[8] comprised 2.1% (17/800) detected from 2013 to 2015. Whole genome sequencing confirmed the DS-1-like backbone I2-R2-C2-M2-A2-N2-T2-E2-H2. All genome segments of the Brazilian DS-1-like-G1P[8] strains clustered with those of Asian strains, and apart from African DS-1-like-G1P[8] strains. In addition, Brazilian DS-1-likeG1P[8] reassortants distantly clustered with DS-1-like backbone strains simultaneously circulating in the country, suggesting that the Brazilian DS-1-like-G1P[8] strains are likely imported from Asia. Two distinct NSP4 E2 genotype lineages were also identified, indicating the existence of a co-circulating pool of different DS-1-like G1P[8] strains. Surveillance systems must be developed to examine if RVA vaccines are still effective for the prevention against unusual DS-1-like-G1P[8] strains.
dc.description.sponsorship · Ministry of Science, Technology and Innovation | Conselho Nacional de Desenvolvimento Científico e Tecnológico (National Council for Scientific and Technological Development) [400354/2016-0]
dc.language.iso eng
dc.publisher NATURE PUBLISHING GROUP
dc.relation.ispartof Scientific Reports
dc.rights openAccess
dc.subject.other equine-like; vaccine introduction; nucleic-acid; g3 rotavirus; gastroenteritis; children; japan; prevalence; emergence; mortality
dc.title First Detection of DS-1-like G1P[8] Double-gene Reassortant Rotavirus Strains on The American Continent, Brazil, 2013
dc.type article
dc.rights.holder Copyright NATURE PUBLISHING GROUP
dc.description.group LIM/46
dc.identifier.doi 10.1038/s41598-019-38703-7
dc.identifier.pmid 30778110
dc.type.category original article
dc.type.version publishedVersion
hcfmusp.author COSTA, Antonio Charlys da:IMT:
hcfmusp.author SABINO, Ester Cerdeira:FM:MIP
hcfmusp.author.external · LUCHS, Adriana:Adolfo Lutz Inst, Virol Ctr, Enter Dis Lab, Sao Paulo, Brazil
· CILLI, Audrey:Adolfo Lutz Inst, Virol Ctr, Enter Dis Lab, Sao Paulo, Brazil
· KOMNINAKIS, Shirley Cavalcante Vasconcelos:Fac Med ABC, Postgrad Program Hlth Sci, Santo Andre, Brazil; Univ Fed Sao Paulo, Retrovirol Lab, Sao Paulo, SP, Brazil
· CARMONA, Rita de Cassia Compagnoli:Adolfo Lutz Inst, Virol Ctr, Enter Dis Lab, Sao Paulo, Brazil
· MORILLO, Simone Guadagnucci:Adolfo Lutz Inst, Virol Ctr, Enter Dis Lab, Sao Paulo, Brazil
· TIMENETSKY, Maria do Carmo Sampaio Tavares:Adolfo Lutz Inst, Virol Ctr, Enter Dis Lab, Sao Paulo, Brazil
hcfmusp.origem.id WOS:000458862200013
hcfmusp.origem.id 2-s2.0-85061714233
hcfmusp.publisher.city LONDON
hcfmusp.publisher.country ENGLAND
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dc.description.index MEDLINE
hcfmusp.citation.scopus 0
hcfmusp.citation.wos 0
hcfmusp.affiliation.country Brasil


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