Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.

Página do item simplificado
dc.contributorSistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP
dc.contributor.authorRAMOS, Patricia L.
dc.contributor.authorTRAPPEN, Stefanie Van
dc.contributor.authorTHOMPSON, Fabiano L.
dc.contributor.authorROCHA, Rafael C. S.
dc.contributor.authorBARBOSA, Heloiza R.
dc.contributor.authorVOS, Paul De
dc.contributor.authorMOREIRA-FILHO, Carlos A.
dc.date.accessioned2017-11-27T16:33:28Z
dc.date.available2017-11-27T16:33:28Z
dc.date.issued2011
dc.description.abstractA Gram-negative, rod-shaped, non-spore-forming and nitrogen-fixing bacterium, designated ICB 89(T), was isolated from stems of a Brazilian sugar cane variety widely used in organic farming. 16S rRNA gene sequence analysis revealed that strain ICB 89(T) belonged to the genus Stenotrophomonas and was most closely related to Stenotrophomonas maltophilia LMG 958(T), Stenotrophomonas rhizophila LMG 22075(T), Stenotrophomonas nitritireducens L2(T), [Pseudomonas] geniculata ATCC 19374(T), [Pseudomonas] hibiscicola ATCC 19867(T) and [Pseudomonas] beteli ATCC 19861(T). DNA-DNA hybridization together with chemotaxonomic data and biochemical characteristics allowed the differentiation of strain ICB 89(T) from its nearest phylogenetic neighbours. Therefore, strain ICB 89(T) represents a novel species, for which the name Stenotrophomonas pavanii sp. nov. is proposed. The type strain is ICB 89(T) (=CBMAI 564(T) =LMG 25348(T)).
dc.description.indexMEDLINE
dc.description.sponsorshipBiota-FAPESP [00/5402-0]
dc.description.sponsorshipCNPq [300966/2006-7]
dc.description.sponsorshipFederal Public Planning Service - Science Policy, Belgium
dc.identifier.citationINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.61, p.926-931, 2011
dc.identifier.doi10.1099/ijs.0.019372-0
dc.identifier.issn1466-5026
dc.identifier.urihttps://observatorio.fm.usp.br/handle/OPI/23283
dc.language.isoeng
dc.publisherSOC GENERAL MICROBIOLOGY
dc.relation.ispartofInternational Journal of Systematic and Evolutionary Microbiology
dc.rightsrestrictedAccess
dc.rights.holderCopyright SOC GENERAL MICROBIOLOGY
dc.subject.otherprotein
dc.subject.othergenus
dc.subject.wosMicrobiology
dc.titleScreening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.
dc.typearticle
dc.type.categoryoriginal article
dc.type.versionpublishedVersion
dspace.entity.typePublication
hcfmusp.affiliation.countryBélgica
hcfmusp.affiliation.countryisobe
hcfmusp.author.externalTRAPPEN, Stefanie Van:Univ Ghent, Microbiol Lab, BCCM LMG Bacteria Collect, Ghent, Belgium
hcfmusp.author.externalTHOMPSON, Fabiano L.:Univ Fed Rio de Janeiro, Inst Biol, Dept Genet, Rio De Janeiro, Brazil
hcfmusp.author.externalROCHA, Rafael C. S.:Univ Sao Paulo, Dept Microbiol, Inst Biomed Sci, Sao Paulo, Brazil
hcfmusp.author.externalBARBOSA, Heloiza R.:Univ Sao Paulo, Dept Microbiol, Inst Biomed Sci, Sao Paulo, Brazil
hcfmusp.author.externalVOS, Paul De:Univ Ghent, Microbiol Lab, BCCM LMG Bacteria Collect, Ghent, Belgium
hcfmusp.citation.scopus81
hcfmusp.contributor.author-fmusphcPATRICIA LOCOSQUE RAMOS
hcfmusp.contributor.author-fmusphcCARLOS ALBERTO MOREIRA FILHO
hcfmusp.description.beginpage926
hcfmusp.description.endpage931
hcfmusp.description.volume61
hcfmusp.origemWOS
hcfmusp.origem.pubmed20495025
hcfmusp.origem.scopus2-s2.0-79955462043
hcfmusp.origem.wosWOS:000290135000039
hcfmusp.publisher.cityREADING
hcfmusp.publisher.countryENGLAND
hcfmusp.relation.referenceALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
hcfmusp.relation.referenceFinkmann W, 2000, INT J SYST EVOL MICR, V50, P273
hcfmusp.relation.referenceLiba CM, 2006, J APPL MICROBIOL, V101, P1076, DOI 10.1111/j.1365-2672.2006.03010.x
hcfmusp.relation.referenceGoris J, 1998, CAN J MICROBIOL, V44, P1148, DOI 10.1139/cjm-44-12-1148
hcfmusp.relation.referencePALLERONI NJ, 1993, INT J SYST BACTERIOL, V43, P606
hcfmusp.relation.referenceAltschul SF, 1997, NUCLEIC ACIDS RES, V25, P3389, DOI 10.1093/nar/25.17.3389
hcfmusp.relation.referenceVega FE, 2005, J BASIC MICROB, V45, P371, DOI 10.1002/jobm.200410551
hcfmusp.relation.referenceCleenwerck I, 2002, INT J SYST EVOL MICR, V52, P1551, DOI 10.1099/ijs.0.02064-0
hcfmusp.relation.referenceAssih EA, 2002, INT J SYST EVOL MICR, V52, P559, DOI 10.1099/ijs.0.01869-0
hcfmusp.relation.referenceIdris A, 2009, J AGR SCI, V147, P17, DOI 10.1017/S0021859608008174
hcfmusp.relation.referenceWolf A, 2002, INT J SYST EVOL MICR, V52, P1937, DOI 10.1099/ijs.0.02135-0
hcfmusp.relation.referenceAzevedo JAG, 2003, REV BRAS ZOOTECN, V32, P1431, DOI 10.1590/S1516-35982003000600018
hcfmusp.relation.referenceCappuccino J. G., 2002, MICROBIOLOGY LAB MAN
hcfmusp.relation.referenceDobereiner J., 1980, Methods for evaluating biological nitrogen fixation., P535
hcfmusp.relation.referenceDrancourt M, 1997, INT J SYST BACTERIOL, V47, P160
hcfmusp.relation.referenceEZAKI B, 1989, MOL GEN GENET, V218, P183, DOI 10.1007/BF00331267
hcfmusp.relation.referenceFelsenstein F, 1985, EVOLUTION, V39, P783
hcfmusp.relation.referenceHartmann A, 2006, PROKARYOTES, V5, P115
hcfmusp.relation.referenceHeylen K, 2007, INT J SYST EVOL MICR, V57, P2056, DOI 10.1099/ijs.0.65044-0
hcfmusp.relation.referenceKAPARULLINA E, 2010, INT J SYST EVOL MICR, V60, P1009
hcfmusp.relation.referenceKaparullina E, 2009, SYST APPL MICROBIOL, V32, P157, DOI 10.1016/j.syapm.2008.12.003
hcfmusp.relation.referenceMESBAH M, 1989, INT J SYST BACTERIOL, V39, P159
hcfmusp.relation.referenceREINHARDT EL, 2008, BRAZ J MICROBIOL, V39, P238
hcfmusp.relation.referenceSAITOU N, 1987, MOL BIOL EVOL, V4, P406
hcfmusp.relation.referenceTurner G. L., 1980, Methods for evaluating biological nitrogen fixation., P111
hcfmusp.relation.referenceWAYNE LG, 1987, INT J SYST BACTERIOL, V37, P463
hcfmusp.relation.referenceWilson K., 1987, CURRENT PROTOCOLS MO, V1
hcfmusp.relation.referenceYang HC, 2006, INT J SYST EVOL MICR, V56, P81, DOI 10.1099/ijs.0.63826-0
hcfmusp.scopus.lastupdate2024-05-17
relation.isAuthorOfPublication51c65529-5f38-4ed2-921b-96325d1b63ae
relation.isAuthorOfPublication34e18b84-dfae-451a-928e-2ebf23ada424
relation.isAuthorOfPublication.latestForDiscovery51c65529-5f38-4ed2-921b-96325d1b63ae
Arquivos
Pacote Original
Agora exibindo 1 - 1 de 1
Nenhuma Miniatura disponível
Nome:
art_RAMOS_Screening_for_endophytic_nitrogenfixing_bacteria_in_Brazilian_sugar_2011.PDF
Tamanho:
149.61 KB
Formato:
Adobe Portable Document Format
Descrição:
publishedVersion (English)
Baixar
Coleções
Artigos e Materiais de Revistas Científicas - FM/MPE
Artigos e Materiais de Revistas Científicas - LIM/36