The 12p13.33/RAD52 Locus and Genetic Susceptibility to Squamous Cell Cancers of Upper Aerodigestive Tract
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Citações na Scopus
10
Tipo de produção
article
Data de publicação
2015
Título da Revista
ISSN da Revista
Título do Volume
Editora
PUBLIC LIBRARY SCIENCE
Autores
DELAHAYE-SOURDEIX, Manon
OLIVER, Javier
TIMOFEEVA, Maria N.
GABORIEAU, Valerie
JOHANSSON, Mattias
CHABRIER, Amelie
WOZNIAK, Magdalena B.
BRENNER, Darren R.
VALLEE, Maxime P.
ANANTHARAMAN, Devasena
Citação
PLOS ONE, v.10, n.3, article ID e0117639, 12p, 2015
Resumo
Genetic variants located within the 12p13.33/RAD52 locus have been associated with lung squamous cell carcinoma (LUSC). Here, within 5,947 UADT cancers and 7,789 controls from 9 different studies, we found rs10849605, a common intronic variant in RAD52, to be also associated with upper aerodigestive tract (UADT) squamous cell carcinoma cases (OR = 1.09, 95% CI: 1.04-1.15, p = 6x10(-4)). We additionally identified rs10849605 as a RAD52 cis-eQTL inUADT(p = 1x10(-3)) and LUSC (p = 9x10(-4)) tumours, with the UADT/LUSC risk allele correlated with increased RAD52 expression levels. The 12p13.33 locus, encompassing rs10849605/RAD52, was identified as a significant somatic focal copy number amplification in UADT(n = 374, q-value = 0.075) and LUSC (n = 464, q-value = 0.007) tumors and correlated with higher RAD52 tumor expression levels (p = 6x10(-48) and p = 3x10(-29) in UADT and LUSC, respectively). In combination, these results implicate increased RAD52 expression in both genetic susceptibility and tumorigenesis of UADT and LUSC tumors.
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Referências
- Adzhubei IA, 2010, NAT METHODS, V7, P248, DOI 10.1038/nmeth0410-248
- Anantharaman D, 2014, PLOS ONE, V9, DOI 10.1371/journal.pone.0088240
- Baumann P, 1998, TRENDS BIOCHEM SCI, V23, P247, DOI 10.1016/S0968-0004(98)01232-8
- Beroukhim R, 2007, P NATL ACAD SCI USA, V104, P20007, DOI 10.1073/pnas.0710052104
- Cramer-Morales K, 2013, BLOOD, V122, P1293, DOI 10.1182/blood-2013-05-501072
- Delahaye-Sourdeix M, 2015, J NATL CANC IN PRESS
- Du P, 2010, BMC BIOINFORMATICS, V11, P587, DOI 10.1186/1471-2105-11-587
- Feng ZH, 2011, P NATL ACAD SCI USA, V108, P686, DOI 10.1073/pnas.1010959107
- Ferlay J, 2010, INT J CANCER, V127, P2893, DOI 10.1002/ijc.25516
- Flicek P, 2013, NUCLEIC ACIDS RES, V41, pD48, DOI 10.1093/nar/gks1236
- Hoeijmakers JHJ, 2001, NATURE, V411, P366, DOI 10.1038/35077232
- Li QY, 2013, CELL, V152, P633, DOI 10.1016/j.cell.2012.12.034
- Liu J, 2011, P NATL ACAD SCI USA, V108, P441, DOI 10.1073/pnas.1016614108
- Lok BH, 2012, CLIN CANCER RES, V18, P6400, DOI 10.1158/1078-0432.CCR-11-3150
- Lok BH, 2013, ONCOGENE, V32, P3552, DOI 10.1038/onc.2012.391
- McKay JD, 2011, PLOS GENET, V7, DOI [10.1371/journal.pgen.1001333, DOI 10.1371/JOURNAL.PGEN.1001333]
- Mermel CH, 2011, GENOME BIOL, V12, DOI 10.1186/gb-2011-12-4-r41
- Mortazavi A, 2008, NAT METHODS, V5, P621, DOI 10.1038/nmeth.1226
- Negri E, 2009, INT J CANCER, V124, P394, DOI 10.1002/ijc.23848
- Ng PC, 2003, NUCLEIC ACIDS RES, V31, P3812, DOI 10.1093/nar/gkg509
- Oze I, 2010, CANCER SCI, V101, P1875, DOI 10.1111/j.1349-7006.2010.01599.x
- Portela A, 2010, NAT BIOTECHNOL, V28, P1057, DOI 10.1038/nbt.1685
- Price AL, 2006, NAT GENET, V38, P904, DOI 10.1038/ng1847
- Pritchard JK, 2000, GENETICS, V155, P945
- Robinson MD, 2010, BIOINFORMATICS, V26, P139, DOI 10.1093/bioinformatics/btp616
- Robinson MD, 2010, GENOME BIOL, V11, DOI 10.1186/gb-2010-11-3-r25
- Scully C, 2000, ORAL ONCOL, V36, P256, DOI 10.1016/S1368-8375(00)00007-5
- Shi JX, 2012, CANCER DISCOV, V2, P131, DOI 10.1158/2159-8290.CD-11-0246
- Smyth G. K., 2005, BIOINFORMATICS COMPU, P397, DOI 10.1007/0-387-29362-0_23
- Stewart BW, 2003, WORLD CANC REPORT
- Stranger BE, 2007, SCIENCE, V315, P848, DOI 10.1126/science.1136678
- Sung P, 2006, NAT REV MOL CELL BIO, V7, P739, DOI 10.1038/nrm2008
- Symington LS, 2002, MICROBIOL MOL BIOL R, V66, P630, DOI 10.1128/MMBR.66.4.630-670.2002
- Thacker J, 1999, BIOCHIMIE, V81, P77, DOI 10.1016/S0300-9084(99)80041-8
- Frazer KA, 2007, NATURE, V449, P851, DOI 10.1038/nature06258
- Timofeeva MN, 2012, HUM MOL GENET, V21, P4980, DOI 10.1093/hmg/dds334
- Wang YF, 2014, NAT GENET, V46, P736, DOI 10.1038/ng.3002
- Yan W, 2011, AM J CANCER RES, V1, P275
- Yu K, 2008, PLOS ONE, V3, DOI 10.1371/journal.pone.0002551