Indigenous people from Amazon show genetic signatures of pathogen-driven selection
Carregando...
Citações na Scopus
Tipo de produção
article
Data de publicação
2023
Título da Revista
ISSN da Revista
Título do Volume
Editora
AMER ASSOC ADVANCEMENT SCIENCE
Autores
COUTO-SILVA, Caina M.
NUNES, Kelly
SILVA, Marcos Araujo Castro e
V, Lygia Pereira
COMAS, David
HUNEMEIER, Tabita
Citação
SCIENCE ADVANCES, v.9, n.10, 2023
Resumo
Ecological conditions in the Amazon rainforests are historically favorable for the transmission of numerous tropical diseases, especially vector-borne diseases. The high diversity of pathogens likely contributes to the strong selective pressures for human survival and reproduction in this region. However, the genetic basis of human adaptation to this complex ecosystem remains unclear. This study investigates the possible footprints of genetic adaptation to the Amazon rainforest environment by analyzing the genomic data of 19 native populations. The results based on genomic and functional analysis showed an intense signal of natural selection in a set of genes related to Trypanosoma cruzi infection, which is the pathogen responsible for Chagas disease, a neglected tropical parasitic disease native to the Americas that is currently spreading worldwide.
Palavras-chave
Referências
- Acuna-Alonzo V, 2010, HUM MOL GENET, V19, P2877, DOI 10.1093/hmg/ddq173
- Aiello Vera Demarchi, 2015, Autops Case Rep, V5, P7, DOI 10.4322/acr.2015.012
- Alexander DH, 2009, GENOME RES, V19, P1655, DOI 10.1101/gr.094052.109
- ALLISON MJ, 1973, AM REV RESPIR DIS, V107, P985
- Altshuler DM, 2015, NATURE, V526, P68, DOI 10.1038/nature15393
- Amorim CEG, 2017, P NATL ACAD SCI USA, V114, P2195, DOI 10.1073/pnas.1620541114
- Amorim CEG, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0121557
- Aufderheide AC, 2004, P NATL ACAD SCI USA, V101, P2034, DOI 10.1073/pnas.0307312101
- BAILEY RC, 1989, AM ANTHROPOL, V91, P59, DOI 10.1525/aa.1989.91.1.02a00040
- Bergey CM, 2018, P NATL ACAD SCI USA, V115, pE11256, DOI 10.1073/pnas.1812135115
- Bergstrom A, 2020, SCIENCE, V367, P1339, DOI 10.1126/science.aay5012
- Borda V, 2020, P NATL ACAD SCI USA, V117, P32557, DOI 10.1073/pnas.2013773117
- Browning SR, 2015, AM J HUM GENET, V97, P404, DOI 10.1016/j.ajhg.2015.07.012
- Buikstra J.E., 1991, HUMAN PALEOPATHOLOGY, P161
- Bycroft C, 2018, NATURE, V562, P203, DOI 10.1038/s41586-018-0579-z
- Casares-Marfil D, 2021, HUM MOL GENET, V30, P2503, DOI 10.1093/hmg/ddab213
- Silva MACE, 2022, MOL BIOL EVOL, V39, DOI 10.1093/molbev/msab339
- Silva MACE, 2021, P NATL ACAD SCI USA, V118, DOI 10.1073/pnas.2025739118
- Silva MACE, 2020, P NATL ACAD SCI USA, V117, P2372, DOI 10.1073/pnas.1909075117
- Confalonieri UEC, 2014, ACTA TROP, V129, P33, DOI 10.1016/j.actatropica.2013.09.013
- Csillery K, 2012, METHODS ECOL EVOL, V3, P475, DOI 10.1111/j.2041-210X.2011.00179.x
- Dahlstrom E, 2017, CURR DIABETES REP, V17, DOI 10.1007/s11892-017-0906-z
- de Arias AR, 2022, MEM I OSWALDO CRUZ, V117, DOI 10.1590/0074-02760210130
- de Filippo C, 2016, MOL BIOL EVOL, V33, P1435, DOI 10.1093/molbev/msw023
- de Rubira A, 2016, ADAPT HUM BEHAV PHYS, V2, P77, DOI 10.1007/s40750-015-0033-5
- Delaneau O, 2013, NAT METHODS, V10, P5, DOI 10.1038/nmeth.2307
- Deng XT, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0079629
- Eberhard FE, 2020, ELIFE, V9, DOI 10.7554/eLife.52072
- Ewing G, 2010, BIOINFORMATICS, V26, P2064, DOI 10.1093/bioinformatics/btq322
- Lima-Costa MF, 2016, PLOS NEGLECT TROP D, V10, DOI 10.1371/journal.pntd.0004724
- Feske S, 2003, BIOCHEM BIOPH RES CO, V311, P1117, DOI 10.1016/j.bbrc.2003.09.174
- Lidani KCF, 2019, FRONT PUBLIC HEALTH, V7, DOI 10.3389/fpubh.2019.00166
- Gautier M, 2017, MOL ECOL RESOUR, V17, P78, DOI 10.1111/1755-0998.12634
- Gautier M, 2012, BIOINFORMATICS, V28, P1176, DOI 10.1093/bioinformatics/bts115
- Gimeno SGA, 2009, J EPIDEMIOL COMMUN H, V63, P299, DOI 10.1136/jech.2008.077966
- Griss J, 2020, MOL CELL PROTEOMICS, V19, DOI 10.1074/mcp.TIR120.002155
- Grote S., GOFUNCR GEN ONT ENR
- Guernier V, 2004, PLOS BIOL, V2, P740, DOI 10.1371/journal.pbio.0020141
- Guhl F, 1997, LANCET, V349, P1370, DOI 10.1016/S0140-6736(05)63207-2
- Harris DN, 2018, P NATL ACAD SCI USA, V115, pE6526, DOI 10.1073/pnas.1720798115
- Hart T. B., 1996, CASE STUDIES HUMAN E, P55
- Hudson RR, 2002, BIOINFORMATICS, V18, P337, DOI 10.1093/bioinformatics/18.2.337
- Hunemeier T, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0038862
- Iyengar SK, 2015, PLOS GENET, V11, DOI 10.1371/journal.pgen.1005352
- Jiao H, 2011, BMC MED GENOMICS, V4, DOI 10.1186/1755-8794-4-51
- Jones AV, 2017, HUM MOL GENET, V26, P1391, DOI 10.1093/hmg/ddx036
- Kanehisa M, 2000, NUCLEIC ACIDS RES, V28, P27, DOI 10.1093/nar/28.1.27
- Kennedy RB, 2012, HUM GENET, V131, P1403, DOI 10.1007/s00439-012-1174-2
- Kim TW, 2016, EUR J IMMUNOL, V46, P712, DOI 10.1002/eji.201545567
- Kim YR, 2019, GENES GENOM, V41, P983, DOI 10.1007/s13258-019-00840-8
- Lima VS, 2008, EMERG INFECT DIS, V14, P1001, DOI 10.3201/eid1406.070707
- Lindo J, 2018, SCI ADV, V4, DOI 10.1126/sciadv.aau4921
- Liu FZ, 2004, BIOSCI BIOTECH BIOCH, V68, P894, DOI 10.1271/bbb.68.894
- Llamas B, 2016, SCI ADV, V2, DOI 10.1126/sciadv.1501385
- Mi HY, 2019, NUCLEIC ACIDS RES, V47, pD419, DOI 10.1093/nar/gky1038
- Mizuguchi T, 2018, HUM MOL GENET, V27, P1421, DOI 10.1093/hmg/ddy052
- Monteiro FA, 2018, ADV PARASIT, V99, P265, DOI 10.1016/bs.apar.2017.12.002
- O'Brien RJ, 2003, J AM COLL CARDIOL, V42, P719, DOI 10.1016/S0735-1097(03)00755-1
- Ojeda-Granados C, 2022, MOL BIOL EVOL, V39, DOI 10.1093/molbev/msab290
- Orrego PR, 2014, PLOS NEGLECT TROP D, V8, DOI 10.1371/journal.pntd.0002676
- Ossa H, 2016, PLOS ONE, V11, DOI 10.1371/journal.pone.0164414
- Patterson N, 2012, GENETICS, V192, P1065, DOI 10.1534/genetics.112.145037
- Peneau J, 2016, PLOS NEGLECT TROP D, V10, DOI 10.1371/journal.pntd.0004427
- Nunes MCP, 2018, CIRCULATION, V138, pE169, DOI 10.1161/CIR.0000000000000599
- Lourenco AE, 2008, AM J HUM BIOL, V20, P564, DOI 10.1002/ajhb.20781
- Ramirez MI, 2000, MOL BIOCHEM PARASIT, V111, P235, DOI 10.1016/S0166-6851(00)00309-1
- Ratnam J, 2011, GLOBAL ECOL BIOGEOGR, V20, P653, DOI 10.1111/j.1466-8238.2010.00634.x
- Redolat Rosa, 2009, Curr Drug Abuse Rev, V2, P230
- Rees JS, 2020, TRENDS GENET, V36, P415, DOI 10.1016/j.tig.2020.03.006
- Robichon C, 2006, BBA-MOL CELL BIOL L, V1761, P1107, DOI 10.1016/j.bbalip.2006.07.007
- Salzano F. M., 2019, AMERINDIAN MICROCOSM
- Santos R. V., 1994, SAUDE POVOS INDIGENA
- Sarbassov DD, 2005, SCIENCE, V307, P1098, DOI 10.1126/science.1106148
- Seim I, 2008, BMC MOL BIOL, V9, DOI 10.1186/1471-2199-9-95
- Sharma Arun, 2018, Curr Protoc Hum Genet, V96, DOI 10.1002/cphg.53
- Shelly EM, 2016, PUBLIC HEALTH REP, V131, P59, DOI 10.1177/003335491613100112
- Skoglund P, 2015, NATURE, V525, P104, DOI 10.1038/nature14895
- Soares LP, 2015, DIABETOL METAB SYNDR, V7, DOI 10.1186/s13098-015-0100-x
- Sowton AP, 2020, MOL GENET METAB REP, V23, DOI 10.1016/j.ymgmr.2020.100580
- Tauil PL, 2009, EMERG INFECT DIS, V15, P625, DOI 10.3201/eid1504.090169
- Tournebize R, 2022, PLOS GENET, V18, DOI 10.1371/journal.pgen.1010243
- Tovo-Rodrigues L, 2010, AM J PHYS ANTHROPOL, V143, P458, DOI 10.1002/ajpa.21358
- Walker RS, 2015, SCI REP-UK, V5, DOI 10.1038/srep14032
- Wang K, 2010, NUCLEIC ACIDS RES, V38, DOI 10.1093/nar/gkq603
- Watanabe K, 2017, NAT COMMUN, V8, DOI 10.1038/s41467-017-01261-5
- Wei WH, 2012, EUR J HUM GENET, V20, P857, DOI 10.1038/ejhg.2012.17
- Wingo T, 2016, J NEUROIMMUNE PHARM, V11, P456, DOI 10.1007/s11481-015-9636-7
- Xu AP, 2018, BIOSCIENCE REP, V38, DOI [10.1042/BSR20181160, 10.1042/bsr20181160]
- Xu P, 2006, CELL IMMUNOL, V240, P116, DOI 10.1016/j.cellimm.2006.07.004
- Yi X, 2010, SCIENCE, V329, P75, DOI 10.1126/science.1190371
- Zhang B, 2005, NUCLEIC ACIDS RES, V33, pW741, DOI 10.1093/nar/gki475