Indigenous people from Amazon show genetic signatures of pathogen-driven selection

Carregando...
Imagem de Miniatura
Citações na Scopus
Tipo de produção
article
Data de publicação
2023
Título da Revista
ISSN da Revista
Título do Volume
Editora
AMER ASSOC ADVANCEMENT SCIENCE
Autores
COUTO-SILVA, Caina M.
NUNES, Kelly
SILVA, Marcos Araujo Castro e
V, Lygia Pereira
COMAS, David
HUNEMEIER, Tabita
Citação
SCIENCE ADVANCES, v.9, n.10, 2023
Projetos de Pesquisa
Unidades Organizacionais
Fascículo
Resumo
Ecological conditions in the Amazon rainforests are historically favorable for the transmission of numerous tropical diseases, especially vector-borne diseases. The high diversity of pathogens likely contributes to the strong selective pressures for human survival and reproduction in this region. However, the genetic basis of human adaptation to this complex ecosystem remains unclear. This study investigates the possible footprints of genetic adaptation to the Amazon rainforest environment by analyzing the genomic data of 19 native populations. The results based on genomic and functional analysis showed an intense signal of natural selection in a set of genes related to Trypanosoma cruzi infection, which is the pathogen responsible for Chagas disease, a neglected tropical parasitic disease native to the Americas that is currently spreading worldwide.
Palavras-chave
Referências
  1. Acuna-Alonzo V, 2010, HUM MOL GENET, V19, P2877, DOI 10.1093/hmg/ddq173
  2. Aiello Vera Demarchi, 2015, Autops Case Rep, V5, P7, DOI 10.4322/acr.2015.012
  3. Alexander DH, 2009, GENOME RES, V19, P1655, DOI 10.1101/gr.094052.109
  4. ALLISON MJ, 1973, AM REV RESPIR DIS, V107, P985
  5. Altshuler DM, 2015, NATURE, V526, P68, DOI 10.1038/nature15393
  6. Amorim CEG, 2017, P NATL ACAD SCI USA, V114, P2195, DOI 10.1073/pnas.1620541114
  7. Amorim CEG, 2015, PLOS ONE, V10, DOI 10.1371/journal.pone.0121557
  8. Aufderheide AC, 2004, P NATL ACAD SCI USA, V101, P2034, DOI 10.1073/pnas.0307312101
  9. BAILEY RC, 1989, AM ANTHROPOL, V91, P59, DOI 10.1525/aa.1989.91.1.02a00040
  10. Bergey CM, 2018, P NATL ACAD SCI USA, V115, pE11256, DOI 10.1073/pnas.1812135115
  11. Bergstrom A, 2020, SCIENCE, V367, P1339, DOI 10.1126/science.aay5012
  12. Borda V, 2020, P NATL ACAD SCI USA, V117, P32557, DOI 10.1073/pnas.2013773117
  13. Browning SR, 2015, AM J HUM GENET, V97, P404, DOI 10.1016/j.ajhg.2015.07.012
  14. Buikstra J.E., 1991, HUMAN PALEOPATHOLOGY, P161
  15. Bycroft C, 2018, NATURE, V562, P203, DOI 10.1038/s41586-018-0579-z
  16. Casares-Marfil D, 2021, HUM MOL GENET, V30, P2503, DOI 10.1093/hmg/ddab213
  17. Silva MACE, 2022, MOL BIOL EVOL, V39, DOI 10.1093/molbev/msab339
  18. Silva MACE, 2021, P NATL ACAD SCI USA, V118, DOI 10.1073/pnas.2025739118
  19. Silva MACE, 2020, P NATL ACAD SCI USA, V117, P2372, DOI 10.1073/pnas.1909075117
  20. Confalonieri UEC, 2014, ACTA TROP, V129, P33, DOI 10.1016/j.actatropica.2013.09.013
  21. Csillery K, 2012, METHODS ECOL EVOL, V3, P475, DOI 10.1111/j.2041-210X.2011.00179.x
  22. Dahlstrom E, 2017, CURR DIABETES REP, V17, DOI 10.1007/s11892-017-0906-z
  23. de Arias AR, 2022, MEM I OSWALDO CRUZ, V117, DOI 10.1590/0074-02760210130
  24. de Filippo C, 2016, MOL BIOL EVOL, V33, P1435, DOI 10.1093/molbev/msw023
  25. de Rubira A, 2016, ADAPT HUM BEHAV PHYS, V2, P77, DOI 10.1007/s40750-015-0033-5
  26. Delaneau O, 2013, NAT METHODS, V10, P5, DOI 10.1038/nmeth.2307
  27. Deng XT, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0079629
  28. Eberhard FE, 2020, ELIFE, V9, DOI 10.7554/eLife.52072
  29. Ewing G, 2010, BIOINFORMATICS, V26, P2064, DOI 10.1093/bioinformatics/btq322
  30. Lima-Costa MF, 2016, PLOS NEGLECT TROP D, V10, DOI 10.1371/journal.pntd.0004724
  31. Feske S, 2003, BIOCHEM BIOPH RES CO, V311, P1117, DOI 10.1016/j.bbrc.2003.09.174
  32. Lidani KCF, 2019, FRONT PUBLIC HEALTH, V7, DOI 10.3389/fpubh.2019.00166
  33. Gautier M, 2017, MOL ECOL RESOUR, V17, P78, DOI 10.1111/1755-0998.12634
  34. Gautier M, 2012, BIOINFORMATICS, V28, P1176, DOI 10.1093/bioinformatics/bts115
  35. Gimeno SGA, 2009, J EPIDEMIOL COMMUN H, V63, P299, DOI 10.1136/jech.2008.077966
  36. Griss J, 2020, MOL CELL PROTEOMICS, V19, DOI 10.1074/mcp.TIR120.002155
  37. Grote S., GOFUNCR GEN ONT ENR
  38. Guernier V, 2004, PLOS BIOL, V2, P740, DOI 10.1371/journal.pbio.0020141
  39. Guhl F, 1997, LANCET, V349, P1370, DOI 10.1016/S0140-6736(05)63207-2
  40. Harris DN, 2018, P NATL ACAD SCI USA, V115, pE6526, DOI 10.1073/pnas.1720798115
  41. Hart T. B., 1996, CASE STUDIES HUMAN E, P55
  42. Hudson RR, 2002, BIOINFORMATICS, V18, P337, DOI 10.1093/bioinformatics/18.2.337
  43. Hunemeier T, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0038862
  44. Iyengar SK, 2015, PLOS GENET, V11, DOI 10.1371/journal.pgen.1005352
  45. Jiao H, 2011, BMC MED GENOMICS, V4, DOI 10.1186/1755-8794-4-51
  46. Jones AV, 2017, HUM MOL GENET, V26, P1391, DOI 10.1093/hmg/ddx036
  47. Kanehisa M, 2000, NUCLEIC ACIDS RES, V28, P27, DOI 10.1093/nar/28.1.27
  48. Kennedy RB, 2012, HUM GENET, V131, P1403, DOI 10.1007/s00439-012-1174-2
  49. Kim TW, 2016, EUR J IMMUNOL, V46, P712, DOI 10.1002/eji.201545567
  50. Kim YR, 2019, GENES GENOM, V41, P983, DOI 10.1007/s13258-019-00840-8
  51. Lima VS, 2008, EMERG INFECT DIS, V14, P1001, DOI 10.3201/eid1406.070707
  52. Lindo J, 2018, SCI ADV, V4, DOI 10.1126/sciadv.aau4921
  53. Liu FZ, 2004, BIOSCI BIOTECH BIOCH, V68, P894, DOI 10.1271/bbb.68.894
  54. Llamas B, 2016, SCI ADV, V2, DOI 10.1126/sciadv.1501385
  55. Mi HY, 2019, NUCLEIC ACIDS RES, V47, pD419, DOI 10.1093/nar/gky1038
  56. Mizuguchi T, 2018, HUM MOL GENET, V27, P1421, DOI 10.1093/hmg/ddy052
  57. Monteiro FA, 2018, ADV PARASIT, V99, P265, DOI 10.1016/bs.apar.2017.12.002
  58. O'Brien RJ, 2003, J AM COLL CARDIOL, V42, P719, DOI 10.1016/S0735-1097(03)00755-1
  59. Ojeda-Granados C, 2022, MOL BIOL EVOL, V39, DOI 10.1093/molbev/msab290
  60. Orrego PR, 2014, PLOS NEGLECT TROP D, V8, DOI 10.1371/journal.pntd.0002676
  61. Ossa H, 2016, PLOS ONE, V11, DOI 10.1371/journal.pone.0164414
  62. Patterson N, 2012, GENETICS, V192, P1065, DOI 10.1534/genetics.112.145037
  63. Peneau J, 2016, PLOS NEGLECT TROP D, V10, DOI 10.1371/journal.pntd.0004427
  64. Nunes MCP, 2018, CIRCULATION, V138, pE169, DOI 10.1161/CIR.0000000000000599
  65. Lourenco AE, 2008, AM J HUM BIOL, V20, P564, DOI 10.1002/ajhb.20781
  66. Ramirez MI, 2000, MOL BIOCHEM PARASIT, V111, P235, DOI 10.1016/S0166-6851(00)00309-1
  67. Ratnam J, 2011, GLOBAL ECOL BIOGEOGR, V20, P653, DOI 10.1111/j.1466-8238.2010.00634.x
  68. Redolat Rosa, 2009, Curr Drug Abuse Rev, V2, P230
  69. Rees JS, 2020, TRENDS GENET, V36, P415, DOI 10.1016/j.tig.2020.03.006
  70. Robichon C, 2006, BBA-MOL CELL BIOL L, V1761, P1107, DOI 10.1016/j.bbalip.2006.07.007
  71. Salzano F. M., 2019, AMERINDIAN MICROCOSM
  72. Santos R. V., 1994, SAUDE POVOS INDIGENA
  73. Sarbassov DD, 2005, SCIENCE, V307, P1098, DOI 10.1126/science.1106148
  74. Seim I, 2008, BMC MOL BIOL, V9, DOI 10.1186/1471-2199-9-95
  75. Sharma Arun, 2018, Curr Protoc Hum Genet, V96, DOI 10.1002/cphg.53
  76. Shelly EM, 2016, PUBLIC HEALTH REP, V131, P59, DOI 10.1177/003335491613100112
  77. Skoglund P, 2015, NATURE, V525, P104, DOI 10.1038/nature14895
  78. Soares LP, 2015, DIABETOL METAB SYNDR, V7, DOI 10.1186/s13098-015-0100-x
  79. Sowton AP, 2020, MOL GENET METAB REP, V23, DOI 10.1016/j.ymgmr.2020.100580
  80. Tauil PL, 2009, EMERG INFECT DIS, V15, P625, DOI 10.3201/eid1504.090169
  81. Tournebize R, 2022, PLOS GENET, V18, DOI 10.1371/journal.pgen.1010243
  82. Tovo-Rodrigues L, 2010, AM J PHYS ANTHROPOL, V143, P458, DOI 10.1002/ajpa.21358
  83. Walker RS, 2015, SCI REP-UK, V5, DOI 10.1038/srep14032
  84. Wang K, 2010, NUCLEIC ACIDS RES, V38, DOI 10.1093/nar/gkq603
  85. Watanabe K, 2017, NAT COMMUN, V8, DOI 10.1038/s41467-017-01261-5
  86. Wei WH, 2012, EUR J HUM GENET, V20, P857, DOI 10.1038/ejhg.2012.17
  87. Wingo T, 2016, J NEUROIMMUNE PHARM, V11, P456, DOI 10.1007/s11481-015-9636-7
  88. Xu AP, 2018, BIOSCIENCE REP, V38, DOI [10.1042/BSR20181160, 10.1042/bsr20181160]
  89. Xu P, 2006, CELL IMMUNOL, V240, P116, DOI 10.1016/j.cellimm.2006.07.004
  90. Yi X, 2010, SCIENCE, V329, P75, DOI 10.1126/science.1190371
  91. Zhang B, 2005, NUCLEIC ACIDS RES, V33, pW741, DOI 10.1093/nar/gki475