Please use this identifier to cite or link to this item: https://observatorio.fm.usp.br/handle/OPI/30109
Title: An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
Authors: LIU, JianfangLICHTENBERG, TaraHOADLEY, Katherine A.POISSON, Laila M.LAZAR, Alexander J.CHERNIACK, Andrew D.KOVATICH, Albert J.BENZ, Christopher C.LEVINE, Douglas A.LEE, Adrian V.OMBERG, LarssonWOLF, Denise M.SHRIVER, Craig D.THORSSON, VesteinnHU, Hai
Citation: CELL, v.173, n.2, p.400-416.e11, 2018
Abstract: For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale.
Appears in Collections:

Artigos e Materiais de Revistas Científicas - FM/Outros
Outros departamentos - FM/Outros

Artigos e Materiais de Revistas Científicas - IMT
Instituto de Medicina Tropical - IMT

Artigos e Materiais de Revistas Científicas - LIM/14
LIM/14 - Laboratório de Investigação em Patologia Hepática


Files in This Item:
File Description SizeFormat 
art_LIU_An_Integrated_TCGA_PanCancer_Clinical_Data_Resource_to_2018.PDF
  Restricted Access
publishedVersion (English)6.37 MBAdobe PDFView/Open Request a copy

Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.