Human sapovirus GI.2 and GI.3 from children with acute gastroenteritis in northern Brazil

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dc.contributor Sistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP
dc.contributor.author CILLI, Audrey
LUCHS, Adriana
LEAL, Elcio
GILL, Danielle FMUSP-HC
MILAGRES, Flavio Augusto de Padua
KOMNINAKIS, Shirley Vasconcelos FMUSP-HC
BRUSTULIN, Rafael
TELES, Maria da Aparecida Rodrigues
LOBATO, Marcia Cristina Alves Brito Sayao
CHAGAS, Rogerio Togisaki das
ABRAO, Maria de Fatima Neves dos Santos
SOARES, Cassia Vitoria de Deus Alves
DENG, Xutao
DELWART, Eric
SABINO, Ester Cerdeira FMUSP-HC
COSTA, Antonio Charlys da FMUSP-HC
dc.date.issued 2019
dc.identifier.citation MEMORIAS DO INSTITUTO OSWALDO CRUZ, v.114, article ID UNSP e180574, 4p, 2019
dc.identifier.issn 0074-0276
dc.identifier.uri http://observatorio.fm.usp.br/handle/OPI/31716
dc.description.abstract Human sapoviruses (HSaV) are considered important causative agents of acute gastroenteritis in humans worldwide. However, knowledge of the genetic characteristics of the whole genome of HSaV in Brazil is limited. Here we report the complete genome sequences of six HSaVs GI.2 and two GI.3 strains obtained from children with acute gastroenteritis in the Northern region of Brazil. Next generation sequencing was used to obtain the full genome and molecular characterization of the genome was performed. Phylogenetic analysis of the genome was also performed. Only one complete HSaV GI.2 genome characterization in the country precedes that of the present study. This is the first complete genome sequence of genotype GI.3 in Brazil. The data obtained in this investigation can contribute to the augmentation of the database on the molecular diversity of HSaVs strains circulating in Brazil, and to the improvement of current typing protocols.
dc.language.iso eng
dc.publisher FUNDACO OSWALDO CRUZ
dc.relation.ispartof Memorias do Instituto Oswaldo Cruz
dc.rights openAccess
dc.subject Caliciviridae; sapovirus; gastroenteritis; genotypes; deep sequencing
dc.subject.other caliciviruses; norovirus
dc.title Human sapovirus GI.2 and GI.3 from children with acute gastroenteritis in northern Brazil
dc.type article
dc.rights.holder Copyright FUNDACO OSWALDO CRUZ
dc.description.group LIM/46
dc.identifier.doi 10.1590/0074-02760180574
dc.identifier.pmid 30970051
dc.type.category original article
dc.type.version publishedVersion
hcfmusp.author GILL, Danielle:IMT:
hcfmusp.author KOMNINAKIS, Shirley Vasconcelos:IMT:
hcfmusp.author SABINO, Ester Cerdeira:FM:MIP
hcfmusp.author COSTA, Antonio Charlys da:IMT:
hcfmusp.author.external · CILLI, Audrey:Adolfo Lutz Inst, Ctr Virol, Nucleo Doencas Enter, Sao Paulo, SP, Brazil
· LUCHS, Adriana:Adolfo Lutz Inst, Ctr Virol, Nucleo Doencas Enter, Sao Paulo, SP, Brazil
· LEAL, Elcio:Univ Fed Para, Inst Ciencias Biol, Belem, Para, Brazil
· MILAGRES, Flavio Augusto de Padua:Univ Fed Tocantins, Palmas, TO, Brazil; Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· BRUSTULIN, Rafael:Univ Fed Tocantins, Palmas, TO, Brazil; Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· TELES, Maria da Aparecida Rodrigues:Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· LOBATO, Marcia Cristina Alves Brito Sayao:Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· CHAGAS, Rogerio Togisaki das:Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· ABRAO, Maria de Fatima Neves dos Santos:Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· SOARES, Cassia Vitoria de Deus Alves:Lab Cent Saude Publ Tocantins, Palmas, TO, Brazil; Secretaria Saude Tocantins, Palmas, TO, Brazil
· DENG, Xutao:Blood Syst Res Inst, San Francisco, CA USA; Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA
· DELWART, Eric:Blood Syst Res Inst, San Francisco, CA USA; Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94143 USA
hcfmusp.origem.id WOS:000464253800001
hcfmusp.origem.id SCIELO:S0074-02762019000100403
hcfmusp.origem.id 2-s2.0-85064722064
hcfmusp.publisher.city RIO DE JANEIRO, RJ
hcfmusp.publisher.country BRAZIL
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dc.description.index MEDLINE
dc.identifier.eissn 1678-8060
hcfmusp.citation.scopus 0
hcfmusp.citation.wos 0
hcfmusp.affiliation.country Brasil
hcfmusp.affiliation.country Estados Unidos


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