Phylogenetics, Epidemiology and Temporal Patterns of Dengue Virus in Araraquara, São Paulo State

Página do item simplificado
dc.contributorSistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP
dc.contributor.authorSOUZA, Caio Santos de
dc.contributor.authorCALEIRO, Giovana Santos
dc.contributor.authorCLARO, Ingra Morales
dc.contributor.authorJESUS, Jaqueline Goes de
dc.contributor.authorCOLETTI, Thais Moura
dc.contributor.authorSILVA, Camila Alves Maia da
dc.contributor.authorCOSTA, Angela Aparecida
dc.contributor.authorINENAMI, Marta
dc.contributor.authorRIBEIRO, Andreia C.
dc.contributor.authorFELIX, Alvina Clara
dc.contributor.authorPAULA, Anderson Vicente de
dc.contributor.authorFIGUEIREDO, Walter M.
dc.contributor.authorLUNA, Expedito Jose de Albuquerque
dc.contributor.authorSABINO, Ester C.
dc.contributor.authorROMANO, Camila M.
dc.date.accessioned2024-04-05T19:34:22Z
dc.date.available2024-04-05T19:34:22Z
dc.date.issued2024
dc.description.abstractDengue virus (DENV) is a prominent arbovirus with global spread, causing approximately 390 million infections each year. In Brazil, yearly epidemics follow a well-documented pattern of serotype replacement every three to four years on average. Araraquara, located in the state of Sao Paulo, has faced significant impacts from DENV epidemics since the emergence of DENV-1 in 2010. The municipality then transitioned from low to moderate endemicity in less than 10 years. Yet, there remains an insufficient understanding of virus circulation dynamics, particularly concerning DENV-1, in the region, as well as the genetic characteristics of the virus. To address this, we sequenced 37 complete or partial DENV-1 genomes sampled from 2015 to 2022 in Araraquara. Then, using also Brazilian and worldwide DENV-1 sequences we reconstructed the evolutionary history of DENV-1 in Araraquara and estimated the time to the most recent common ancestor (tMRCA) for serotype 1, for genotype V and its main lineages. Within the last ten years, there have been at least three introductions of genotype V in Araraquara, distributed in two main lineages (L Ia and L Ib, and L II). The tMRCA for the first sampled lineage (2015/2016 epidemics) was approximately 15 years ago (in 2008). Crucially, our analysis challenges existing assumptions regarding the emergence time of the DENV-1 genotypes, suggesting that genotype V might have diverged more recently than previously described. The presence of the two lineages of genotype V in the municipality might have contributed to the extended persistence of DENV-1 in the region.eng
dc.description.indexMEDLINE
dc.description.indexPubMed
dc.description.indexScopus
dc.description.indexDimensions
dc.description.indexWoS
dc.description.sponsorshipFAPESP
dc.identifier.citationVIRUSES-BASEL, v.16, n.2, article ID 274, 10p, 2024
dc.identifier.doi10.3390/v16020274
dc.identifier.eissn1999-4915
dc.identifier.urihttps://observatorio.fm.usp.br/handle/OPI/58964
dc.language.isoeng
dc.publisherMDPIeng
dc.relation.ispartofViruses-Basel
dc.rightsopenAccesseng
dc.rights.holderCopyright MDPIeng
dc.subjectdengue viruseng
dc.subjectDENV-1eng
dc.subjectclade replacementeng
dc.subjectphylogenyeng
dc.subject.otherdenv-1 genotype veng
dc.subject.otherpopulation-dynamicseng
dc.subject.otherbrazileng
dc.subject.otherevolutioneng
dc.subject.otherpcreng
dc.subject.otherdiversityeng
dc.subject.otherlineageeng
dc.subject.wosVirologyeng
dc.titlePhylogenetics, Epidemiology and Temporal Patterns of Dengue Virus in Araraquara, São Paulo Stateeng
dc.typearticleeng
dc.type.categoryoriginal articleeng
dc.type.versionpublishedVersioneng
dspace.entity.typePublication
hcfmusp.author.externalCOSTA, Angela Aparecida:Univ Sao Paulo, Serv Especial Saude Araraquara SESA, Fac Saude Publ, BR-01246904 Sao Paulo, SP, Brazil
hcfmusp.author.externalINENAMI, Marta:Univ Sao Paulo, Serv Especial Saude Araraquara SESA, Fac Saude Publ, BR-01246904 Sao Paulo, SP, Brazil
hcfmusp.author.externalRIBEIRO, Andreia C.:Univ Sao Paulo, Serv Especial Saude Araraquara SESA, Fac Saude Publ, BR-01246904 Sao Paulo, SP, Brazil
hcfmusp.author.externalFIGUEIREDO, Walter M.:Univ Sao Paulo, Serv Especial Saude Araraquara SESA, Fac Saude Publ, BR-01246904 Sao Paulo, SP, Brazil
hcfmusp.citation.scopus0
hcfmusp.contributor.author-fmusphcCAIO SANTOS DE SOUZA
hcfmusp.contributor.author-fmusphcGIOVANA SANTOS CALEIRO
hcfmusp.contributor.author-fmusphcINGRA MORALES CLARO
hcfmusp.contributor.author-fmusphcJAQUELINE GOES DE JESUS
hcfmusp.contributor.author-fmusphcTHAIS DE MOURA COLETTI
hcfmusp.contributor.author-fmusphcCAMILA ALVES MAIA DA SILVA FONZAGHI
hcfmusp.contributor.author-fmusphcALVINA CLARA FELIX
hcfmusp.contributor.author-fmusphcANDERSON VICENTE DE PAULA
hcfmusp.contributor.author-fmusphcEXPEDITO JOSE DE ALBUQUERQUE LUNA
hcfmusp.contributor.author-fmusphcESTER CERDEIRA SABINO
hcfmusp.contributor.author-fmusphcCAMILA MALTA ROMANO
hcfmusp.description.articlenumber274
hcfmusp.description.issue2
hcfmusp.description.volume16
hcfmusp.origemWOS
hcfmusp.origem.dimensionspub.1168761526
hcfmusp.origem.pubmed38400049
hcfmusp.origem.scopus2-s2.0-85186269509
hcfmusp.origem.wosWOS:001172409100001
hcfmusp.publisher.cityBASELeng
hcfmusp.publisher.countrySWITZERLANDeng
hcfmusp.relation.reference[Anonymous], 2019, Ministerio da Saude Obito por Arboviroses no Brasileng
hcfmusp.relation.referenceArmstrong PM, 2003, AM J TROP MED HYG, V68, P539, DOI 10.4269/ajtmh.2003.68.539eng
hcfmusp.relation.referenceBRASIL Ministerio da Saude Secretaria de Vigilancia em Saude Sistema de Informacao de Agravos de Notificacao (SINAN), About useng
hcfmusp.relation.referenceCallahan JD, 2001, J CLIN MICROBIOL, V39, P4119, DOI 10.1128/JCM.39.11.4119-4124.2001eng
hcfmusp.relation.referenceCentro de Vigilancia Epidemiologica, 2015, Prof. Alexandre Vranjac""Dados Estatisticoseng
hcfmusp.relation.referenceClaro I.M., 2021, Ph.D. Thesis, DOI [10.11606/T.5.2021.tde-07012022-140752, DOI 10.11606/T.5.2021.TDE-07012022-140752]eng
hcfmusp.relation.referenceCologna R, 2003, J VIROL, V77, P3929, DOI 10.1128/JVI.77.7.3929-3938.2003eng
hcfmusp.relation.referencede Bruycker-Nogueira F, 2018, SCI REP-UK, V8, DOI 10.1038/s41598-018-35622-xeng
hcfmusp.relation.referencede Bruycker-Nogueira F, 2015, INFECT GENET EVOL, V34, P126, DOI 10.1016/j.meegid.2015.07.007eng
hcfmusp.relation.referencede Jesus JG, 2020, MEM I OSWALDO CRUZ, V115, DOI 10.1590/0074-02760190423eng
hcfmusp.relation.referencede Souza CS, 2022, REV INST MED TROP SP, V64, DOI [10.1590/S1678-9946202264044, 10.1590/s1678-9946202264044]eng
hcfmusp.relation.referencede Souza UJB, 2023, VIRUSES-BASEL, V15, DOI 10.3390/v15112136eng
hcfmusp.relation.referenceDíaz Y, 2019, VIRUSES-BASEL, V11, DOI 10.3390/v11080764eng
hcfmusp.relation.referenceDrummond AJ, 2012, MOL BIOL EVOL, V29, P1969, DOI 10.1093/molbev/mss075eng
hcfmusp.relation.referenceEuropean Center for Disease Control, Dengue Worldwide Overvieweng
hcfmusp.relation.referenceFerreira AC, 2018, REV SAUDE PUBL, V52, DOI [10.11606/S1518-8787.2018052000414, 10.11606/s1518-8787.2018052000414]eng
hcfmusp.relation.referenceFerreira MAR, 2008, CAN J STAT, V36, P355, DOI 10.1002/cjs.5550360302eng
hcfmusp.relation.referenceGoncalvez AP, 2002, VIROLOGY, V303, P110, DOI 10.1006/viro.2002.1686eng
hcfmusp.relation.referenceGouy M, 2010, MOL BIOL EVOL, V27, P221, DOI 10.1093/molbev/msp259eng
hcfmusp.relation.referenceNunes PCG, 2016, J MED VIROL, V88, P1130, DOI 10.1002/jmv.24464eng
hcfmusp.relation.referenceGularte JS, 2023, J CLIN VIROL, V168, DOI 10.1016/j.jcv.2023.105599eng
hcfmusp.relation.referenceHuhtamo E, 2010, J CLIN VIROL, V47, P49, DOI 10.1016/j.jcv.2009.11.001eng
hcfmusp.relation.referenceKatoh K, 2013, MOL BIOL EVOL, V30, P772, DOI 10.1093/molbev/mst010eng
hcfmusp.relation.referenceKatzelnick LC, 2021, SCIENCE, V374, P999, DOI 10.1126/science.abk0058eng
hcfmusp.relation.referenceLefkowitz EJ, 2018, NUCLEIC ACIDS RES, V46, pD708, DOI 10.1093/nar/gkx932eng
hcfmusp.relation.referenceLiu Chia-Hsin, 2020, Methods Mol Biol, V2102, P61, DOI 10.1007/978-1-0716-0223-2_4eng
hcfmusp.relation.referenceLuna E, 2020, DATA BRIEF, V29, DOI 10.1016/j.dib.2020.105266eng
hcfmusp.relation.referenceLuna EJA, 2020, ACTA TROP, V204, DOI 10.1016/j.actatropica.2019.105313eng
hcfmusp.relation.referenceMartin DP, 2015, VIRUS EVOL, V1, DOI 10.1093/ve/vev003eng
hcfmusp.relation.referenceMinh BQ, 2020, MOL BIOL EVOL, V37, P1530, DOI 10.1093/molbev/msaa015eng
hcfmusp.relation.referenceMinisterio da Saude, Monitoramento dos Casos de Arboviroses Ate a Semana Epidemiologica 51 de 2022eng
hcfmusp.relation.referenceNaveca F.G., 2023, medRxiv, DOI [10.3201/eid2907.230595, DOI 10.3201/EID2907.230595]eng
hcfmusp.relation.referenceQuick J, 2017, NAT PROTOC, V12, P1261, DOI 10.1038/nprot.2017.066eng
hcfmusp.relation.referenceRambaut A., 2009, FIGTREE V1 3 1eng
hcfmusp.relation.referenceRICOHESSE R, 1990, VIROLOGY, V174, P479, DOI 10.1016/0042-6822(90)90102-Weng
hcfmusp.relation.referenceTan CH, 2022, MICROORGANISMS, V10, DOI 10.3390/microorganisms10061100eng
hcfmusp.relation.referenceTeoh BT, 2013, BMC EVOL BIOL, V13, DOI 10.1186/1471-2148-13-213eng
hcfmusp.relation.referenceThu HM, 2005, VIROLOGY, V336, P163, DOI 10.1016/j.virol.2005.03.018eng
hcfmusp.relation.referenceTwiddy SS, 2003, INFECT GENET EVOL, V3, P87, DOI 10.1016/S1567-1348(02)00153-3eng
hcfmusp.relation.referenceVillabona-Arenas CJ, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0062649eng
hcfmusp.relation.referenceWHO, Dengue and severe dengueeng
hcfmusp.relation.referenceZanotto PMD, 1996, P NATL ACAD SCI USA, V93, P548, DOI 10.1073/pnas.93.2.548eng
hcfmusp.scopus.lastupdate2024-05-17
relation.isAuthorOfPublication356a46e5-ee34-4fba-99b6-cfd7a8849fa0
relation.isAuthorOfPublication68c321e9-686e-4034-8881-ccd6e1a89158
relation.isAuthorOfPublicationbc5cea5b-381b-4206-97c2-4cb758215561
relation.isAuthorOfPublicationd9ca69bb-3fa3-4410-b2f4-1190efc586d6
relation.isAuthorOfPublicationb8c22b26-33b1-4196-991c-080f5a4249a0
relation.isAuthorOfPublication6da896e3-ac2d-4b83-90d6-536d5f1375d1
relation.isAuthorOfPublication0e34be19-825e-4d51-9285-25c4f1437dad
relation.isAuthorOfPublication638286f3-9642-4d7a-b0bd-e112b41a4598
relation.isAuthorOfPublication68ca9ace-34dc-4608-8ffa-b42f5278e34e
relation.isAuthorOfPublication7d122e95-afc6-426e-9255-72fdf621b547
relation.isAuthorOfPublication6bbf3a61-ee5f-431c-b68d-7f040abc8f15
relation.isAuthorOfPublication.latestForDiscoveryb8c22b26-33b1-4196-991c-080f5a4249a0
Arquivos
Coleções
Artigos e Materiais de Revistas Científicas - FM/MPR