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https://observatorio.fm.usp.br/handle/OPI/38961
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DC Field | Value | Language |
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dc.contributor | Sistema FMUSP-HC: Faculdade de Medicina da Universidade de São Paulo (FMUSP) e Hospital das Clínicas da FMUSP | |
dc.contributor.author | LIMA, Daniel M. | |
dc.contributor.author | RODRIGUES-JR, Jose F. | |
dc.contributor.author | TRAINA, Agma J. M. | |
dc.contributor.author | PIRES, Fabio A. | |
dc.contributor.author | GUTIERREZ, Marco A. | |
dc.date.accessioned | 2021-01-25T19:35:01Z | - |
dc.date.available | 2021-01-25T19:35:01Z | - |
dc.date.issued | 2019 | |
dc.identifier.citation | MEDINFO 2019: HEALTH AND WELLBEING E-NETWORKS FOR ALL, v.264, p.233-237, 2019 | |
dc.identifier.isbn | 978-1-64368-003-3; 978-1-64368-002-6 | |
dc.identifier.issn | 0926-9630 | |
dc.identifier.uri | https://observatorio.fm.usp.br/handle/OPI/38961 | - |
dc.description.abstract | This paper presents the extract-transform-and-load (ETL) process from the Electronic Patient Records (ePR) at the Heart Institute (InCor) to the OMOP Common Data Model (CDM) format. We describe the initial database characterization, relational source mappings, selection filters, data transformations and patient de-identification using the open-source OHDSI tools and SQL scripts. We evaluate the resulting InCor-CDM database by recreating the same patient cohort from a previous reference study (over the original data source) and comparing the cohorts' descriptive statistics and inclusion reports. The results exhibit that up to 91% of the reference patients were retrieved by our method from the ePR through InCor-CDM, with AUC=0.938. The results indicate that the method that we employed was able to produce a new database that was both consistent with the original data and in accordance to the OMOP CDM standard. | eng |
dc.description.sponsorship | FAPESPFundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP) [2018/11424-0] | |
dc.description.sponsorship | CNPqNational Council for Scientific and Technological Development (CNPq) [406550/2018-2, 305580/2017-5] | |
dc.description.sponsorship | InCor's Informatics Service | |
dc.language.iso | eng | |
dc.publisher | IOS PRESS | eng |
dc.relation.ispartof | Medinfo 2019: Health and Wellbeing E-Networks for All | |
dc.relation.ispartofseries | Studies in Health Technology and Informatics | |
dc.rights | restrictedAccess | eng |
dc.subject | Medical Informatics | eng |
dc.subject | Health Information Exchange | eng |
dc.subject | Data Curation | eng |
dc.subject.other | information | eng |
dc.title | Transforming Two Decades of ePR Data to OMOP CDM for Clinical Research | eng |
dc.type | conferenceObject | eng |
dc.rights.holder | Copyright IOS PRESS | eng |
dc.description.conferencedate | AUG 25-30, 2019 | |
dc.description.conferencelocal | Int Med Informat Assoc, Lyon, FRANCE | |
dc.description.conferencename | 17th World Congress of Medical and Health Informatics (MEDINFO) | |
dc.identifier.doi | 10.3233/SHTI190218 | |
dc.subject.wos | Computer Science, Interdisciplinary Applications | eng |
dc.subject.wos | Health Care Sciences & Services | eng |
dc.subject.wos | Medical Informatics | eng |
dc.type.category | proceedings paper | eng |
dc.type.version | publishedVersion | eng |
hcfmusp.author.external | LIMA, Daniel M.:Univ Sao Paulo, Inst Math & Comp Sci ICMC, Sao Carlos, SP, Brazil | |
hcfmusp.author.external | RODRIGUES-JR, Jose F.:Univ Sao Paulo, Inst Math & Comp Sci ICMC, Sao Carlos, SP, Brazil | |
hcfmusp.author.external | TRAINA, Agma J. M.:Univ Sao Paulo, Inst Math & Comp Sci ICMC, Sao Carlos, SP, Brazil | |
hcfmusp.description.beginpage | 233 | |
hcfmusp.description.endpage | 237 | |
hcfmusp.description.volume | 264 | |
hcfmusp.origem | WOS | |
hcfmusp.origem.id | WOS:000569653400047 | |
hcfmusp.publisher.city | AMSTERDAM | eng |
hcfmusp.publisher.country | NETHERLANDS | eng |
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hcfmusp.relation.reference | Yoon D, 2016, HEALTHC INFORM RES, V22, P54, DOI 10.4258/hir.2016.22.1.54 | eng |
dc.description.index | MEDLINE | eng |
dc.identifier.eissn | 1879-8365 | |
Appears in Collections: | Comunicações em Eventos - HC/InCor Comunicações em Eventos - LIM/65 |
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art_LIMA_Transforming_Two_Decades_of_ePR_Data_to_OMOP_2019.PDF Restricted Access | publishedVersion (English) | 228.54 kB | Adobe PDF | View/Open Request a copy |
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