Phylogenetics, Epidemiology and Temporal Patterns of Dengue Virus in Araraquara, São Paulo State

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Tipo de produção
article
Data de publicação
2024
DOI
Scopus
Web of Science
PubMed
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Título da Revista
ISSN da Revista
Título do Volume
Editora
MDPI
Autores
COSTA, Angela Aparecida
INENAMI, Marta
RIBEIRO, Andreia C.
Citação
VIRUSES-BASEL, v.16, n.2, article ID 274, 10p, 2024
Projetos de Pesquisa
Unidades Organizacionais
Fascículo
Resumo
Dengue virus (DENV) is a prominent arbovirus with global spread, causing approximately 390 million infections each year. In Brazil, yearly epidemics follow a well-documented pattern of serotype replacement every three to four years on average. Araraquara, located in the state of Sao Paulo, has faced significant impacts from DENV epidemics since the emergence of DENV-1 in 2010. The municipality then transitioned from low to moderate endemicity in less than 10 years. Yet, there remains an insufficient understanding of virus circulation dynamics, particularly concerning DENV-1, in the region, as well as the genetic characteristics of the virus. To address this, we sequenced 37 complete or partial DENV-1 genomes sampled from 2015 to 2022 in Araraquara. Then, using also Brazilian and worldwide DENV-1 sequences we reconstructed the evolutionary history of DENV-1 in Araraquara and estimated the time to the most recent common ancestor (tMRCA) for serotype 1, for genotype V and its main lineages. Within the last ten years, there have been at least three introductions of genotype V in Araraquara, distributed in two main lineages (L Ia and L Ib, and L II). The tMRCA for the first sampled lineage (2015/2016 epidemics) was approximately 15 years ago (in 2008). Crucially, our analysis challenges existing assumptions regarding the emergence time of the DENV-1 genotypes, suggesting that genotype V might have diverged more recently than previously described. The presence of the two lineages of genotype V in the municipality might have contributed to the extended persistence of DENV-1 in the region.
Palavras-chave
dengue virus, DENV-1, clade replacement, phylogeny
URI
https://observatorio.fm.usp.br/handle/OPI/58964
Referências
  1. [Anonymous], 2019, Ministerio da Saude Obito por Arboviroses no Brasil
  2. Armstrong PM, 2003, AM J TROP MED HYG, V68, P539, DOI 10.4269/ajtmh.2003.68.539
  3. BRASIL Ministerio da Saude Secretaria de Vigilancia em Saude Sistema de Informacao de Agravos de Notificacao (SINAN), About us
  4. Callahan JD, 2001, J CLIN MICROBIOL, V39, P4119, DOI 10.1128/JCM.39.11.4119-4124.2001
  5. Centro de Vigilancia Epidemiologica, 2015, Prof. Alexandre Vranjac""Dados Estatisticos
  6. Claro I.M., 2021, Ph.D. Thesis, DOI [10.11606/T.5.2021.tde-07012022-140752, DOI 10.11606/T.5.2021.TDE-07012022-140752]
  7. Cologna R, 2003, J VIROL, V77, P3929, DOI 10.1128/JVI.77.7.3929-3938.2003
  8. de Bruycker-Nogueira F, 2018, SCI REP-UK, V8, DOI 10.1038/s41598-018-35622-x
  9. de Bruycker-Nogueira F, 2015, INFECT GENET EVOL, V34, P126, DOI 10.1016/j.meegid.2015.07.007
  10. de Jesus JG, 2020, MEM I OSWALDO CRUZ, V115, DOI 10.1590/0074-02760190423
  11. de Souza CS, 2022, REV INST MED TROP SP, V64, DOI [10.1590/S1678-9946202264044, 10.1590/s1678-9946202264044]
  12. de Souza UJB, 2023, VIRUSES-BASEL, V15, DOI 10.3390/v15112136
  13. Díaz Y, 2019, VIRUSES-BASEL, V11, DOI 10.3390/v11080764
  14. Drummond AJ, 2012, MOL BIOL EVOL, V29, P1969, DOI 10.1093/molbev/mss075
  15. European Center for Disease Control, Dengue Worldwide Overview
  16. Ferreira AC, 2018, REV SAUDE PUBL, V52, DOI [10.11606/S1518-8787.2018052000414, 10.11606/s1518-8787.2018052000414]
  17. Ferreira MAR, 2008, CAN J STAT, V36, P355, DOI 10.1002/cjs.5550360302
  18. Goncalvez AP, 2002, VIROLOGY, V303, P110, DOI 10.1006/viro.2002.1686
  19. Gouy M, 2010, MOL BIOL EVOL, V27, P221, DOI 10.1093/molbev/msp259
  20. Nunes PCG, 2016, J MED VIROL, V88, P1130, DOI 10.1002/jmv.24464
  21. Gularte JS, 2023, J CLIN VIROL, V168, DOI 10.1016/j.jcv.2023.105599
  22. Huhtamo E, 2010, J CLIN VIROL, V47, P49, DOI 10.1016/j.jcv.2009.11.001
  23. Katoh K, 2013, MOL BIOL EVOL, V30, P772, DOI 10.1093/molbev/mst010
  24. Katzelnick LC, 2021, SCIENCE, V374, P999, DOI 10.1126/science.abk0058
  25. Lefkowitz EJ, 2018, NUCLEIC ACIDS RES, V46, pD708, DOI 10.1093/nar/gkx932
  26. Liu Chia-Hsin, 2020, Methods Mol Biol, V2102, P61, DOI 10.1007/978-1-0716-0223-2_4
  27. Luna E, 2020, DATA BRIEF, V29, DOI 10.1016/j.dib.2020.105266
  28. Luna EJA, 2020, ACTA TROP, V204, DOI 10.1016/j.actatropica.2019.105313
  29. Martin DP, 2015, VIRUS EVOL, V1, DOI 10.1093/ve/vev003
  30. Minh BQ, 2020, MOL BIOL EVOL, V37, P1530, DOI 10.1093/molbev/msaa015
  31. Ministerio da Saude, Monitoramento dos Casos de Arboviroses Ate a Semana Epidemiologica 51 de 2022
  32. Naveca F.G., 2023, medRxiv, DOI [10.3201/eid2907.230595, DOI 10.3201/EID2907.230595]
  33. Quick J, 2017, NAT PROTOC, V12, P1261, DOI 10.1038/nprot.2017.066
  34. Rambaut A., 2009, FIGTREE V1 3 1
  35. RICOHESSE R, 1990, VIROLOGY, V174, P479, DOI 10.1016/0042-6822(90)90102-W
  36. Tan CH, 2022, MICROORGANISMS, V10, DOI 10.3390/microorganisms10061100
  37. Teoh BT, 2013, BMC EVOL BIOL, V13, DOI 10.1186/1471-2148-13-213
  38. Thu HM, 2005, VIROLOGY, V336, P163, DOI 10.1016/j.virol.2005.03.018
  39. Twiddy SS, 2003, INFECT GENET EVOL, V3, P87, DOI 10.1016/S1567-1348(02)00153-3
  40. Villabona-Arenas CJ, 2013, PLOS ONE, V8, DOI 10.1371/journal.pone.0062649
  41. WHO, Dengue and severe dengue
  42. Zanotto PMD, 1996, P NATL ACAD SCI USA, V93, P548, DOI 10.1073/pnas.93.2.548

Coleções
Artigos e Materiais de Revistas Científicas - FM/MPR